From 01aaef87e83a8d39572e46a87ebb22a3510060d5 Mon Sep 17 00:00:00 2001 From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu> Date: Thu, 4 Mar 2021 10:29:04 -0600 Subject: [PATCH] Allow uploadExexutionRun to happen with pipeline error(metadata match) --- rna-seq.nf | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/rna-seq.nf b/rna-seq.nf index 379d8a9..311b6c3 100644 --- a/rna-seq.nf +++ b/rna-seq.nf @@ -1706,7 +1706,6 @@ pipelineError.into { pipelineError_uploadProcessedFile pipelineError_uploadOutputBag pipelineError_failExecutionRun - pipelineError_uploadExecutionRun pipelineError_finalizeExecutionRun pipelineError_uploadQC_fail } @@ -2274,14 +2273,13 @@ process uploadExecutionRun { val seqtypeError from seqtypeError_uploadExecutionRun val speciesErrorSeqwho from speciesErrorSeqwho_uploadExecutionRun val speciesError from speciesError_uploadExecutionRun - val pipelineError from pipelineError_uploadExecutionRun output: path ("executionRunRID.csv") into executionRunRID_fl when: upload - fastqCountError == "false" && fastqReadError == "false" && fastqFileError == "false" && seqtypeError == "false" && speciesErrorSeqwho == "false" && speciesError == "false" && pipelineError == "false" + fastqCountError == "false" && fastqReadError == "false" && fastqFileError == "false" && seqtypeError == "false" && speciesErrorSeqwho == "false" && speciesError == "false" script: """ -- GitLab