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The runner for cutandrun

A general purpose Astrocyte workflow to run quality control on single cell RNA sequencing data.

An Astrocyte workflow to run cellranger count on droplet-based single cell RNA data generated by 10x Genomics.

An Astrocyte workflow for interactive visualization and exploration of single cell data using CZ CELLxGENE.

An example workflow package for the BioHPC Astrocyte workflow engine.

An example workflow package for the BioHPC Astrocyte workflow engine.

An example workflow package for the BioHPC Astrocyte workflow engine.

This is the conversion of the BICF RNASeq pipeline into the nextflow framework.