Explore projects

R code for subsample correlation analysis as used in Thody et al. 2022.

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

The runner for cutandrun

This project houses code from the Meeks Lab and TIBIR Whole Brain Microscopy Facility that facilitates image registration and analysis

Source codes to perform simulations of microtubule growth. Cleary et al. 2022, Elife, "Measurements and simulations of microtubule growth imply strong longitudinal interactions and reveal a role for GDP on the elongating end".

TAD aware Regulatory Network Construction (TReNCo). The package provides scripts for constructing cell-type specific mouse TF-gene networks.