Explore projects

The general gene expression analysis pipeline of 10X Visium data

Program that overlays MEG dipoles onto MRI images and provides region highlighting to show where the dipoles are located.

Source codes to perform simulations of microtubule growth. McCormick and Cleary et al. 2023 (in preparation), "Interface-acting nucleotide controls polymerization dynamics at microtubule plus- and minus-ends".

Journal Club for foundational machine learning topics

Transcript Analyzer is a module that aids in looking at and identifying target phrases in transcripts. There are two main files ProbTimeSeries.py and TranscriptAnalyzer.py the latter of which uses Streamlit to create an app

A repository for code to replicate the analysis of single cell data from female human urethra.

Files from the Advanced Concepts of Deep Learning Nanocourse

This is a test repo

A vagrant box containing the setup necessary for building singularity images

Simple Gears to help you start your own development at UT Southwestern

code for interchangeability by Nancy Obuchowski

Notebooks and scripts provided here can be used for analyzing data files generated by Tecan and Biotek plate readers.

Analysis scripts for projects related to germ cell tumors.

Generate flow-rate gradients with Fluigent microfluidic pumps.

3 month training notes/walkthrough of excersises