Explore projects

This project is the astrocyte project to do variant analysis with BAMs generated in the RNASeq Differential expression analysis pipeline.

Parameter exploration job runner for the BioHPC nucleus cluster.

DeBias decouples global bias from direct interactions in co-orientation and co-localization data.

Monolayer spatiotemporal dynamics analysis.

This project houses code from the Meeks Lab and TIBIR Whole Brain Microscopy Facility that facilitates image registration and analysis

Accession Research Samples into Clarity. Creates a project based on the current month or uses existing month project if it already exists.

An example of ATAC-seq using BioHPC Astrocyte workflow engine.

Quick and dirty singularity bootstrap definitions for all biocontainers.

Notebooks and scripts provided here can be used for analyzing data files generated by Tecan and Biotek plate readers.

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

cutandrun pipeline from https://github.com/nf-core/cutandrun

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

additional steps are necessary to build HON within UTSW due to proxy and firewalls

Analysis scripts for projects related to germ cell tumors.

Generate flow-rate gradients with Fluigent microfluidic pumps.