Explore projects

An Astrocyte workflow to run cellranger count on droplet-based single cell RNA data generated by 10x Genomics.

Notebooks and scripts provided here can be used for analyzing data files generated by Tecan and Biotek plate readers.

An example workflow package for the BioHPC Astrocyte workflow engine.

Encapsulates the migration of data from genomeseer database, integration of Clarity data and visualization via a web application

The flash-community FTP project allows users to share their files with guests.

AI segmentation for axial T2W MR Autosomal Dominant Polycystic Kidney Disease (https://github.com/aksg87/adpkd-segmentation-pytorch)

Course material for machine learning course offered to UTSW community.

Tools for processing droplet microfluidics data in R.

De novo circular RNA detection from circular viral genome

additional steps are necessary to build HON within UTSW due to proxy and firewalls

Parameter exploration job runner for the BioHPC nucleus cluster.

TAD aware Regulatory Network Construction (TReNCo). The package provides scripts for constructing cell-type specific mouse TF-gene networks.

Quick and dirty singularity bootstrap definitions for all biocontainers.