Explore projects

Course material for machine learning course offered to UTSW community.

Tools for processing droplet microfluidics data in R.

additional steps are necessary to build HON within UTSW due to proxy and firewalls

This project is the astrocyte project to do variant analysis with BAMs generated in the RNASeq Differential expression analysis pipeline.

De novo circular RNA detection from circular viral genome

Parameter exploration job runner for the BioHPC nucleus cluster.

TAD aware Regulatory Network Construction (TReNCo). The package provides scripts for constructing cell-type specific mouse TF-gene networks.

Generate flow-rate gradients with Fluigent microfluidic pumps.

This project houses code from the Meeks Lab and TIBIR Whole Brain Microscopy Facility that facilitates image registration and analysis

Quick and dirty singularity bootstrap definitions for all biocontainers.

Accession Research Samples into Clarity. Creates a project based on the current month or uses existing month project if it already exists.

This repository contains scripts for ChIP-seq and RNA-seq analysis used in ARF paper

A repository for code to replicate the analysis of single cell data from female human urethra.

Example static site using mkdocs for BioHPC GitLab pages.

Source codes to perform simulations of microtubule growth. Cleary et al. 2022, Elife, "Measurements and simulations of microtubule growth imply strong longitudinal interactions and reveal a role for GDP on the elongating end".