Explore projects

Various ODE and SDE models

Monolayer spatiotemporal dynamics analysis.

Source codes to perform simulations of microtubule growth. McCormick and Cleary et al. 2023 (in preparation), "Interface-acting nucleotide controls polymerization dynamics at microtubule plus- and minus-ends".

An example of ATAC-seq using BioHPC Astrocyte workflow engine.

An example workflow package for the BioHPC Astrocyte workflow engine.

The flash-community FTP project allows users to share their files with guests.

An Astrocyte workflow to run cellranger count on droplet-based single cell RNA data generated by 10x Genomics.

Notebooks and scripts provided here can be used for analyzing data files generated by Tecan and Biotek plate readers.

misc code specific for placenta study

This is the code repository for the manuscript "Characterization of Demographical Histologic Diversity in Small Renal Masses with the Clear Cell Likelihood Score"

This project is the astrocyte project to do variant analysis with BAMs generated in the RNASeq Differential expression analysis pipeline.