Commits · main · Astrocyte / Workflows / Strand Lab / scRNA_analysis_pipeline

Feb 27, 2025
- Add invalid samplesheet test · f8e1ac1d
  John Lafin authored 2 months ago
  
  publish_1.1.1
  
  f8e1ac1d
Feb 20, 2025
- Update docs · b7b1ad98
  John Lafin authored 2 months ago
  
  test_1.1.0
  
  b7b1ad98
- Enable nf-schema for samplesheet · 37e79533
  John Lafin authored 2 months ago
  
  37e79533
- Uncomment download commands · 7ac33a32
  John Lafin authored 2 months ago
  
  7ac33a32
- Prevent case specifity for species · ffca0205
  John Lafin authored 2 months ago
  
  ffca0205
Feb 06, 2025
- Make sample_sheet a channel for QC · 4b4c9d66
  John Lafin authored 2 months ago
  
  test_1.0.1
  
  4b4c9d66
Jan 30, 2025
- Move CxG output to root dir for vizapp · 2edde3ad
  John Lafin authored 3 months ago
  
  test_1.0.0
  
  2edde3ad
Jan 23, 2025
- Update nextflow version · 377a1e76
  John Lafin authored 3 months ago
  
  377a1e76
- Enable vizapp · 69dbf2fa
  John Lafin authored 3 months ago
  
  69dbf2fa
- Enable CxG setup · 85505205
  John Lafin authored 3 months ago
  
  85505205
- Fix typo · 79216372
  John Lafin authored 3 months ago
  
  79216372
- Update QC step to accept pipeline inputs · fd7469f6
  John Lafin authored 3 months ago
  
  fd7469f6
Jan 02, 2025
- Prepare input to QC process · 77ee0b20
  John Lafin authored 3 months ago
  
  77ee0b20
Dec 19, 2024
- Use GPU only for CellBender · 1209e86a
  John Lafin authored 4 months ago
  
  1209e86a
- Clean up inputs and use pbmc as test · e6c55d31
  John Lafin authored 4 months ago
  
  e6c55d31
- Change test data from gbm to pbmc · dc06885d
  John Lafin authored 4 months ago
  
  dc06885d
- Fix sample sheet split · eb464357
  John Lafin authored 4 months ago
  
  eb464357
- Remove . in header · d7fcb87e
  John Lafin authored 4 months ago
  
  d7fcb87e
Nov 21, 2024
- Modify processes for chaining · 943fdf02
  John Lafin authored 5 months ago
  
  943fdf02
- Update test data and sample sheet · 6233e212
  John Lafin authored 5 months ago
  
  6233e212
Nov 14, 2024
- update scripts and config · 009c4f8c
  John Lafin authored 5 months ago
  
  009c4f8c
- update metadata and docs · e8c2b0c9
  John Lafin authored 5 months ago
  
  e8c2b0c9
Oct 24, 2024
- Initial commit · b4b55261
  John Lafin authored 6 months ago
  
  b4b55261