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scRNA_analysis_pipeline
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Astrocyte
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Strand Lab
scRNA_analysis_pipeline
Commits
1209e86a
Commit
1209e86a
authored
4 months ago
by
John Lafin
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Use GPU only for CellBender
parent
e6c55d31
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workflow/configs/biohpc.config
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workflow/configs/biohpc.config
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2 deletions
workflow/configs/biohpc.config
+
2
−
2
View file @
1209e86a
...
@@ -4,14 +4,14 @@ process {
...
@@ -4,14 +4,14 @@ process {
clusterOptions
=
'--no-kill'
clusterOptions
=
'--no-kill'
queue
=
'256GBv2,512GB,256GB,256GBv1,128GB'
queue
=
'256GBv2,512GB,256GB,256GBv1,128GB'
time
=
'8h'
time
=
'8h'
with
_l
abel
:
gpu
{
with
L
abel
:
gpu
{
queue
=
'GPUv100s,GPUp100'
queue
=
'GPUv100s,GPUp100'
containerOptions
=
'--nv'
}
}
}
}
singularity
{
singularity
{
enabled
=
true
enabled
=
true
runOptions
=
'--nv'
cacheDir
=
"${projectDir}/images/singularity"
cacheDir
=
"${projectDir}/images/singularity"
}
}
...
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