Skip to content
Snippets Groups Projects
Commit 4b4c9d66 authored by John Lafin's avatar John Lafin
Browse files

Make sample_sheet a channel for QC

parent 2edde3ad
No related merge requests found
Hide whitespace changes
Inline Side-by-side
Showing
with 2 additions and 1 deletion
workflow/main.nf
+ 2
− 1
View file @ 4b4c9d66
...@@ -214,7 +214,8 @@ workflow { ...@@ -214,7 +214,8 @@ workflow {
cb_out = cellbender.out.cb_out.collect(flat: false) cb_out = cellbender.out.cb_out.collect(flat: false)
// Run preliminary quality control and pre-processing // Run preliminary quality control and pre-processing
quality_control(cb_out, params.sample_sheet, params.species, params.batch_var) sample_sheet = Channel.fromPath(params.sample_sheet)
quality_control(cb_out, sample_sheet, params.species, params.batch_var)
// Prepare output for CELLxGENE // Prepare output for CELLxGENE
qc_out = quality_control.out.qc_out qc_out = quality_control.out.qc_out
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment