Commits · master · Astrocyte / Workflows / Strand Lab / cellranger-count

Oct 10, 2024
- Use nf-core container · 80637b1f
  John Lafin authored 5 months ago
  
  2 tags
  
  80637b1f
Jul 25, 2024
- Change sample_sheet from path to file · 8f6aab2c
  John Lafin authored 7 months ago
  
  2 tags
  
  8f6aab2c
- Make sample_sheet a value channel · a989ed38
  John Lafin authored 7 months ago
  
  test_1.2.5
  
  a989ed38
- Convert introns to lowercase · 8648f5f5
  John Lafin authored 7 months ago
  
  test_1.2.4
  
  8648f5f5
- Include sample sheet in workdir · e82db028
  John Lafin authored 7 months ago
  
  e82db028
- Convert all T/F in sample sheet to lowercase · bfcf2b9f
  John Lafin authored 7 months ago
  
  test_1.2.3
  
  bfcf2b9f
- Add example tables to docs · 346b55d3
  John Lafin authored 7 months ago
  
  346b55d3
Jun 27, 2024
- Remove astrocyte config from web form · 5214df90
  John Lafin authored 8 months ago
  
  2 tags
  
  5214df90
- Set astrocyte param in config · 6d17ee1d
  John Lafin authored 8 months ago
  
  test_1.2.1
  
  6d17ee1d
- Add task_id to output dir · 5fb31dbb
  John Lafin authored 8 months ago
  
  5fb31dbb
Jun 20, 2024
- Refactor conditionals; fix parameters · b82a03d9
  John Lafin authored 8 months ago
  
  2 tags
  
  b82a03d9
- Add barnyard reference · 6be8a574
  John Lafin authored 8 months ago
  
  6be8a574
- Merge branch 'multisample' into 'master' · 10f9fd51
  John Lafin authored 8 months ago
```
Multisample

See merge request !4
```
  10f9fd51
- Update test inputs · abe9129c
  John Lafin authored 8 months ago
  
  abe9129c
Feb 01, 2024
- Add second option to astrocyte parameter · 203876e5
  John Lafin authored 1 year ago
  
  2 tags
  
  203876e5
- Fix reference issue and add astrocyte param · 730486f9
  John Lafin authored 1 year ago
  
  test_1.1.3
  
  730486f9
Jan 25, 2024
- Update docs · 6f64ef3c
  John Lafin authored 1 year ago
  
  6f64ef3c
- Update CI to multisample · 75d67e38
  John Lafin authored 1 year ago
  
  1.1.3-ci
  
  75d67e38
- Split input tuple to fix cardinality · d2aaa8ab
  John Lafin authored 1 year ago
  
  test_1.1.2
  
  d2aaa8ab
Jan 18, 2024
- Allow runs to continue if one fails · b5665cc2
  John Lafin authored 1 year ago
  
  b5665cc2
- Update docs for multisample · 79e8ba4a
  John Lafin authored 1 year ago
  
  test_1.1.1
  
  79e8ba4a
- Add multisample functionality · 082a02f5
  John Lafin authored 1 year ago
  
  test_1.1.0
  
  082a02f5
- Move test data · 08aa924b
  John Lafin authored 1 year ago
  
  08aa924b
- Update nextflow version to 23.04.3 · 3cea5527
  John Lafin authored 1 year ago
  
  3cea5527
Dec 14, 2023
- Update docs · e5910839
  John Lafin authored 1 year ago
  
  publish_1.0.0
  
  e5910839
- run CI only on tags · 83ee2a04
  John Lafin authored 1 year ago
  
  83ee2a04
Dec 07, 2023
- Merge branch 'ci' into 'master' · fb97feec
  John Lafin authored 1 year ago
```
Ci

See merge request !2
```
  test_0.0.5
  
  fb97feec
- fix sample and id for barnyard · 8619ed5e
  John Lafin authored 1 year ago
  
  8619ed5e
- remove download step · aed9ea90
  John Lafin authored 1 year ago
  
  aed9ea90
- remove download step · 922ba93a
  John Lafin authored 1 year ago
  
  922ba93a
- fix permissions · 899644eb
  John Lafin authored 1 year ago
  
  899644eb
- run astrocyte and test stages concurrently · 26162358
  John Lafin authored 1 year ago
  
  26162358
- Add astrocyte and barnyard tests · 84beba5c
  John Lafin authored 1 year ago
  
  84beba5c
- add barnyard dl script · c3e5b3f0
  John Lafin authored 1 year ago
  
  c3e5b3f0
- Change logic in download block · 0b50ac75
  John Lafin authored 1 year ago
  
  0b50ac75
- Add -f to nf clean · 1e6bce5c
  John Lafin authored 1 year ago
  
  1e6bce5c
- Check CI on VM · 2c1184b4
  John Lafin authored 1 year ago
  
  2c1184b4
- use ref if path supplied · 7a285dae
  John Lafin authored 1 year ago
  
  7a285dae
- Skip ref download and clean nf work · 2d33b0e6
  John Lafin authored 1 year ago
  
  2d33b0e6
Nov 09, 2023
- Merge branch 'download_ref' into 'master' · c75b6e38
  John Lafin authored 1 year ago
```
Download ref

See merge request !1
```
  c75b6e38