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Commit 346b55d3 authored by John Lafin's avatar John Lafin
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Add example tables to docs

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......@@ -38,6 +38,15 @@ selected, only those matching the sample name will be included.
- **introns**: true/false. Whether to count intronic reads.
- **noBam**: true/false. Whether to skip bam file generation. This will save some time and space, but
bam files may be required for downstream analysis and/or deposition into public databases.
Here's an example sample sheet:
| sample | reference | expectCells | chemistry | introns | noBam |
|-------------------|-----------|-------------|-----------|---------|-------|
| Brain_Tumor_3p_LT | hg38 | 0 | auto | true | true |
| hgmm_100 | mm10 | 0 | auto | true | true |
| hgmm_100 | barnyard | 0 | auto | true | true |
| hgmm_100 | barnyard | 100 | auto | true | false |
## Questions
......
......@@ -33,6 +33,15 @@ selected, only those with prefixes matching the sample name will be included.
- **noBam**: true/false. Whether to skip bam file generation. This will save some time and space, but
bam files may be required for downstream analysis and/or deposition into public databases.
Here's an example sample sheet:
| sample | reference | expectCells | chemistry | introns | noBam |
|-------------------|-----------|-------------|-----------|---------|-------|
| Brain_Tumor_3p_LT | hg38 | 0 | auto | true | true |
| hgmm_100 | mm10 | 0 | auto | true | true |
| hgmm_100 | barnyard | 0 | auto | true | true |
| hgmm_100 | barnyard | 100 | auto | true | false |
## Output
This workflow will provide the following output:
......
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