fix sample and id for barnyard

.gitlab-ci.yml

@@ -25,7 +25,11 @@ test-count-human:   # Run cellranger count on the human data
   before_script:
      - export PATH="/opt/nextflow:/opt/cellranger-7.1.0:$PATH"
   script:
-    - nextflow run workflow/main.nf --reference=/data/ref_data/refdata-gex-GRCh38-2020-A --fastq=/data/test_data/Brain_Tumor_3p_LT_fastqs --noBam=true
+    - >
+      nextflow run workflow/main.nf
+      --reference=/data/ref_data/refdata-gex-GRCh38-2020-A
+      --fastq=/data/test_data/Brain_Tumor_3p_LT_fastqs
+      --noBam=true
     - nextflow clean -f -keep-logs
 
 test-count-barnyard:   # Run cellranger count on the barnyard data
@@ -36,5 +40,11 @@ test-count-barnyard:   # Run cellranger count on the barnyard data
   before_script:
      - export PATH="/opt/nextflow:/opt/cellranger-7.1.0:$PATH"
   script:
-    - nextflow run workflow/main.nf --fastq=/data/test_data/hgmm_100_fastqs --reference=/data/ref_data/refdata-gex-GRCh38-and-mm10-2020-A --noBam=true
+    - >
+      nextflow run workflow/main.nf
+      --id=hgmm_100
+      --sample=hgmm_100
+      --fastq=/data/test_data/hgmm_100_fastqs
+      --reference=/data/ref_data/refdata-gex-GRCh38-and-mm10-2020-A
+      --noBam=true
     - nextflow clean -f -keep-logs