Commits · 662da40e83d199d77bfba81be78ff2629c7f6644 · Astrocyte / Workflows / Strand Lab / cellranger-count

Oct 05, 2023
- Update Astrocyte files and documentation · 662da40e
  John Lafin authored 1 year ago
  
  662da40e
Sep 28, 2023
- Ignore DS_Store files · 07d7fb64
  John Lafin authored 1 year ago
  
  07d7fb64
- Update main.nf to DSL2 · ca51bf8f
  John Lafin authored 1 year ago
  
  ca51bf8f
- Ignore git tracking of test data · 0f8e1e90
  John Lafin authored 1 year ago
  
  0f8e1e90
Sep 26, 2023
- Update README.md · eddb327b
  Hololens Test authored 1 year ago
  
  eddb327b
- Fix basic syntax - now needs nextflow DSL1 override · 7c3b41f8
  Hololens Test authored 1 year ago
  
  7c3b41f8
- Add quiet mode (that doesn't work) to fetch_data · 1c6d6ace
  Hololens Test authored 1 year ago
  
  1c6d6ace
Sep 21, 2023
- remove vizapp and update expectCounts · 40230ba4
  John Lafin authored 1 year ago
  
  40230ba4
- add test data default · e3c7fb07
  John Lafin authored 1 year ago
  
  e3c7fb07
- add script to fetch test data · 43448d79
  John Lafin authored 1 year ago
  
  43448d79
Sep 14, 2023
- Update files away from Wordcount · eb720ea0
  John Lafin authored 1 year ago
  
  eb720ea0
Sep 07, 2023
- Update Giblab CI · 9aa8d8f5
  Peng Lian authored 1 year ago
  
  9aa8d8f5
- Simplify Gitlab CI/CD · 24b13f74
  Peng Lian authored 1 year ago
  
  24b13f74
- Merge branch 'master' into 'master' · 01a16971
  Peng Lian authored 1 year ago
```
Add cleanlines process.

See merge request astrocyte/workflows/biohpc/astrocyte_example_wordcount!6
```
  01a16971
- Update the documentation to include the new process. · e807faa9
  Felix Perez authored 1 year ago
  
  e807faa9
Sep 06, 2023
- Add cleanlines process. · 08c17bc0
  Felix Perez authored 1 year ago
  
  08c17bc0
Aug 16, 2023
- Update Readme and docs · 37b9c64e
  Peng Lian authored 1 year ago
  
  37b9c64e
- Update R and Singularity · 29c4374c
  Peng Lian authored 1 year ago
  
  29c4374c
Jun 14, 2023
- Executed with slrum, fully containerized · 8f8e2fd4
  Peng Lian authored 1 year ago
  
  8f8e2fd4
Aug 15, 2022
- Update container registry · 10787f8c
  Peng Lian authored 2 years ago
  
  10787f8c
Aug 09, 2022
- Init test version 2.0.0 · 931b5ba6
  Peng Lian authored 2 years ago
  
  931b5ba6
Aug 04, 2021
- fix bug with wordcount ranks in example · ce376025
  Erand Smakaj authored 3 years ago
  
  ce376025
- Containerize all processes · 95fcb2bc
  Peng Lian authored 3 years ago
  
  95fcb2bc
Aug 03, 2021
- Update gitlab-ci · c5c7cd53
  Peng Lian authored 3 years ago
  
  c5c7cd53
Jul 28, 2021
- Fix blank output file issue · d958eade
  Peng Lian authored 3 years ago
  
  d958eade
- Fix the /vagrant missing error · c3042afd
  Peng Lian authored 3 years ago
  
  c3042afd
Jul 27, 2021
- Merge branch 'containerized_vizapp' into 'master' · 051382b6
  Peng Lian authored 3 years ago
```
Fix to defaults so that singularity is in the biohpc.config as the default,...

Closes #1

See merge request biohpc/astrocyte_example_wordcount!4
```
  051382b6
- Fix to defaults so that singularity is in the biohpc.config as the default,... · 108ed90e
  Hololens Test authored 3 years ago and Peng Lian committed 3 years ago
  
  108ed90e
Jun 24, 2021

Merge branch 'LocalDockerRegistry' into 'master' · 96d532f2

Peng Lian authored 3 years ago

Merge new CI pipeline with the changes from Peng.

See merge request biohpc/astrocyte_example_wordcount!3

96d532f2

Jun 15, 2021
- Modify container configs to use centos8 for wordcounts · 9de147c8
  Hololens Test authored 3 years ago
  
  9de147c8
- Modify astrocyte_pkg.yml to use 0.4.1 version of astrocyte · c275c56b
  Hololens Test authored 3 years ago
  
  c275c56b
- Comment up .gitlab-ci.yml · 0fcff023
  Hololens Test authored 3 years ago
  
  0fcff023
Jun 14, 2021
- Merge branch 'LocalDockerRegistry' of... · 706e728c
  Hololens Test authored 3 years ago
```
Merge branch 'LocalDockerRegistry' of git.biohpc.swmed.edu:s190450/astrocyte_example_wordcount into LocalDockerRegistry
```
  706e728c
- Update main.nf and biohpc_singularity_gitlab.config to use correct container invoke · 3e4b12b9
  Hololens Test authored 3 years ago
  
  3e4b12b9
- Update biohpc_singularity_gitlab.config · ff03378d
  Hololens Test authored 3 years ago
  
  ff03378d
- Update .gitlab-ci.yml file · 52430372
  Hololens Test authored 3 years ago
  
  52430372
- Update biohpc_singularity_gitlab.config · 744c37a9
  Hololens Test authored 3 years ago
  
  744c37a9
- Update .gitlab-ci.yml file · 7f6620e2
  Hololens Test authored 3 years ago
  
  7f6620e2
- Merge branch 'LocalDockerRegistry' of... · 9af5bb5a
  Hololens Test authored 3 years ago
```
Merge branch 'LocalDockerRegistry' of git.biohpc.swmed.edu:s190450/astrocyte_example_wordcount into LocalDockerRegistry
```
  9af5bb5a
- [ci skip] Adding new configurations for pulling from the gitlab registry · 567e7180
  Hololens Test authored 3 years ago
  
  567e7180