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Commit 29c4374c authored by Peng Lian's avatar Peng Lian
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Update R and Singularity

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......@@ -7,3 +7,5 @@ workflow/*.csv
*.img
*.txt
*.wordcount
.nextflow/
.rlibrary/
......@@ -16,7 +16,7 @@ email: 'biohpc-help@utsouthwestern.edu'
title: 'Example Wordcount Workflow'
# A summary of the workflow package in plain text
description: |
Fully containerized version, runs with BioHPC registry and slurm.
Fully containerized, runs with Astrocyte/2.0.0, BioHPC registry, and SLURM.
#### New Features in Astrocyte 0.4.0 and above ####
citation: |
......@@ -37,7 +37,7 @@ nextflow_config: 'biohpc.config'
# The container to use for this workflow, none/singularity. If omitted, the default value 'none' will be used.
container: 'singularity'
# The version of singularity to use. This is required if container == 'singularity'
singularity_version: '3.5.3'
singularity_version: '3.9.9'
# -----------------------------------------------------------------------------
# DOCUMENTATION
......@@ -172,14 +172,14 @@ workflow_parameters:
# Name of the R module that the vizapp will run against
# A containerized version is recommended.
vizapp_r_module: 'R/4.1.1-img'
vizapp_r_module: 'R/4.2.2-img'
# List of any CRAN packages, not provided by the modules, that must be made
# available to the vizapp
vizapp_cran_packages:
- shiny
- shinyFiles
- plotly
- plotly
# # List of any Bioconductor packages, not provided by the modules, that must be made
# available to the vizapp
......
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