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Commit 3399b9a8 authored by Achisha Saikia's avatar Achisha Saikia
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Update file index.md

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...@@ -27,8 +27,6 @@ Store the fastq.gz files in test_data folder or include the entire path: ...@@ -27,8 +27,6 @@ Store the fastq.gz files in test_data folder or include the entire path:
## Pipeline summary ## Pipeline summary
![Alt text](image.png)
1. Raw read QC ([`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/)) 1. Raw read QC ([`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/))
2. Adapter trimming ([`Trim Galore!`](https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/)) 2. Adapter trimming ([`Trim Galore!`](https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/))
...@@ -77,7 +75,7 @@ Store the fastq.gz files in test_data folder or include the entire path: ...@@ -77,7 +75,7 @@ Store the fastq.gz files in test_data folder or include the entire path:
## Documention ## Documention
The nf-core/cutandrun pipeline comes with documentation about the pipeline usage, parameters and output. The nf-core/atacseq pipeline comes with documentation about the pipeline usage, parameters and output.
See [usage docs](https://nf-co.re/atacseq/usage) for all of the available options when running the pipeline. See [usage docs](https://nf-co.re/atacseq/usage) for all of the available options when running the pipeline.
See [parameters](https://nf-co.re/atacseq/2.1.2/parameters/) for all the parameters. See [parameters](https://nf-co.re/atacseq/2.1.2/parameters/) for all the parameters.
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