diff --git a/docs/index.md b/docs/index.md index fb263b43b0e77e991311e9993c8349dc66064990..1047fc7e6bb5f98210dc3012e9769692f4cc2651 100644 --- a/docs/index.md +++ b/docs/index.md @@ -27,8 +27,6 @@ Store the fastq.gz files in test_data folder or include the entire path: ## Pipeline summary - - 1. Raw read QC ([`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/)) 2. Adapter trimming ([`Trim Galore!`](https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/)) @@ -77,7 +75,7 @@ Store the fastq.gz files in test_data folder or include the entire path: ## Documention -The nf-core/cutandrun pipeline comes with documentation about the pipeline usage, parameters and output. +The nf-core/atacseq pipeline comes with documentation about the pipeline usage, parameters and output. See [usage docs](https://nf-co.re/atacseq/usage) for all of the available options when running the pipeline. See [parameters](https://nf-co.re/atacseq/2.1.2/parameters/) for all the parameters.