From 3399b9a8fb955ffebfcbbcd5f17d15fab8f3e13f Mon Sep 17 00:00:00 2001 From: Achisha Saikia <achisha.saikia@utsouthwestern.edu> Date: Wed, 29 Jan 2025 13:24:40 -0600 Subject: [PATCH] Update file index.md --- docs/index.md | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/docs/index.md b/docs/index.md index fb263b4..1047fc7 100644 --- a/docs/index.md +++ b/docs/index.md @@ -27,8 +27,6 @@ Store the fastq.gz files in test_data folder or include the entire path: ## Pipeline summary - - 1. Raw read QC ([`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/)) 2. Adapter trimming ([`Trim Galore!`](https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/)) @@ -77,7 +75,7 @@ Store the fastq.gz files in test_data folder or include the entire path: ## Documention -The nf-core/cutandrun pipeline comes with documentation about the pipeline usage, parameters and output. +The nf-core/atacseq pipeline comes with documentation about the pipeline usage, parameters and output. See [usage docs](https://nf-co.re/atacseq/usage) for all of the available options when running the pipeline. See [parameters](https://nf-co.re/atacseq/2.1.2/parameters/) for all the parameters. -- GitLab