Commits · ef9a113d4f2fe66b63969ac312b0be099d0b2f34 · Astrocyte / Workflows / BICF / chipseq_analysis

Aug 14, 2019
- Update tests for xcor change · ef9a113d
  Jeremy Mathews authored 5 years ago
  
  ef9a113d
Aug 12, 2019
- Merge branch '47-AnnotatePeaks' into 'master' · c505f1cb
  Venkat Malladi authored 5 years ago
```
Resolve "annotate peaks"

Closes #47

See merge request BICF/Astrocyte/chipseq_analysis!57
```
  c505f1cb
Aug 08, 2019
- Fix biohpc.config · ebaa8534
  Jeremy Mathews authored 5 years ago
  
  ebaa8534
Aug 06, 2019
- Fix and test use of GTF and Genename params · 5e5202b0
  Jeremy Mathews authored 5 years ago
  
  5e5202b0
Aug 01, 2019
- Fix PE annotate peaks assertion in pytest · d716364d
  Jeremy Mathews authored 5 years ago
  
  d716364d
Jul 31, 2019
- Change Annotate Peaks to GTF file reference · b880088c
  Jeremy Mathews authored 5 years ago
  
  b880088c
Jul 30, 2019

Merge branch '58-single-rep' into 'master' · f6036083

Venkat Malladi authored 5 years ago

Resolve "Single control or experiment fails at call peaks macs"

Closes #58

See merge request BICF/Astrocyte/chipseq_analysis!54

f6036083

Jul 26, 2019
- Final Revision: Remove If-Else Statement (Redundant) · a9bfa737
  Jeremy Mathews authored 5 years ago
  
  a9bfa737
Jul 25, 2019
- make df from dict · 596e145d
  Jeremy Mathews authored 5 years ago
  
  596e145d
- new run · c412f90f
  Jeremy Mathews authored 5 years ago
  
  c412f90f
- fix spacing again · e4e239be
  Jeremy Mathews authored 5 years ago
  
  e4e239be
- fix spacing · 254ac382
  Jeremy Mathews authored 5 years ago
  
  254ac382
- redo dict call · 266c57a7
  Jeremy Mathews authored 5 years ago
  
  266c57a7
- redo · cecc9ac6
  Jeremy Mathews authored 5 years ago
  
  cecc9ac6
- change design_df · 57872294
  Jeremy Mathews authored 5 years ago
  
  57872294
- print error · d21683d4
  Jeremy Mathews authored 5 years ago
  
  d21683d4
- Re order pool and pseudoreplicates · e6c55f50
  Jeremy Mathews authored 5 years ago
  
  e6c55f50
Jul 24, 2019
- update reference genome to gtf · 1dd9f5e4
  Jeremy Mathews authored 5 years ago
  
  1dd9f5e4
- change self dict to pool dict · 96b4d6ed
  Jeremy Mathews authored 5 years ago
  
  96b4d6ed
Jul 23, 2019
- Fix final section indentation · bf79da87
  Jeremy Mathews authored 5 years ago
  
  bf79da87
- pool indentation · f6b5c87b
  Jeremy Mathews authored 5 years ago
  
  f6b5c87b
- fix indentation · 0853d200
  Jeremy Mathews authored 5 years ago
  
  0853d200
Jul 22, 2019
- Merge branch 'patch-1' into 'master' · 38f8f83a
  Venkat Malladi authored 5 years ago
```
Update test_generate_software_versions.py

See merge request BICF/Astrocyte/chipseq_analysis!56
```
  38f8f83a
- update CHANGELOG · 93a8086a
  Jeremy Mathews authored 5 years ago
  
  93a8086a
Jul 19, 2019
- Update test_generate_software_versions.py · dce709b4
  Jeremy Mathews authored 5 years ago
  
  dce709b4
- revert to last version · 39092668
  Jeremy Mathews authored 5 years ago
  
  39092668
- Update pool and psuedoreplicates · a202eec2
  Jeremy Mathews authored 5 years ago
  
  a202eec2
- Fix merge conflicts · cf2262ba
  Jeremy Mathews authored 5 years ago
  
  cf2262ba
- Merge branch '29-PlotProfile' into 'master' · aa094631
  Venkat Malladi authored 5 years ago
```
Resolve "add plotProfile"

Closes #29 and #61

See merge request BICF/Astrocyte/chipseq_analysis!55
```
  aa094631
- Remove redundant GTF file · 0466aa32
  Venkat Malladi authored 5 years ago
  
  0466aa32
- fix biohpc.config typos and add gtf location to astrocyte params · c1c8d3a0
  Jeremy Mathews authored 5 years ago
  
  c1c8d3a0
- add assert of new test · 407ee7d5
  Jeremy Mathews authored 5 years ago
  
  407ee7d5
- add assert of new test · b0bc81ff
  Jeremy Mathews authored 5 years ago
  
  b0bc81ff
- assert dementions of new design · e9fa82db
  Jeremy Mathews authored 5 years ago
  
  e9fa82db
Jul 18, 2019
- PR Checklist · 437126b7
  Jeremy Mathews authored 5 years ago
  
  437126b7
- fix indentation in pool and pseudoreplicate · 07e41458
  Jeremy Mathews authored 5 years ago
  
  07e41458
- redo replicate · efc98ccc
  Jeremy Mathews authored 5 years ago
  
  efc98ccc
- Add tagAlign test data · 59962d33
  Jeremy Mathews authored 5 years ago
  
  59962d33
Jul 17, 2019
- add A_1 bed file to test script · 9cc20fdf
  Jeremy Mathews authored 5 years ago
  
  9cc20fdf
- Add A_1 bed file · 0118335d
  Jeremy Mathews authored 5 years ago
  
  0118335d