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Commit 266c57a7 authored by Jeremy Mathews's avatar Jeremy Mathews
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redo dict call

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......@@ -230,17 +230,19 @@ def generate_design(paired, cutoff_ratio, design_df, cwd, no_reps, no_unique_con
design_new_df.at[3, 'tag_align'] = design_new_df.at[0, 'tag_align']
# Make 2 self psuedoreplicates
pool_pseudoreplicates_dict = {}
for rep, tag_file in zip(design_df['replicate'], design_df['tag_align']):
self_pseudoreplicates_dict = {}
for rep, tag_file in zip(design_df['replicate'], design_df['tag_align']):
replicate_prefix = experiment_id + '_' + str(rep)
pool_pseudoreplicates_dict[rep] = \
self_psuedoreplication(tag_file, replicate_prefix, paired)
self_pseudoreplicates_dict = self_psuedoreplication(tag_file, replicate_prefix, paired)
# Update design to include new self pseudo replicates
for rep, pseudorep_file in pool_pseudoreplicates_dict.items():
pool_pseudoreplicates_dict = {}
for rep, pseudorep_file in self_pseudoreplicates_dict.items():
path_to_file = cwd + '/' + pseudorep_file
replicate = rep + 1
design_new_df.loc[replicate, 'tag_align'] = path_to_file
pool_pseudoreplicates_dict[replicate] = path_to_file
# Drop index column
design_new_df.drop(labels='index', axis=1, inplace=True)
......
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