From 266c57a72fd6d3efd8dbcc2044e2eff6b1c29811 Mon Sep 17 00:00:00 2001
From: Jeremy Mathews <Jeremy.Mathews@utsouthwestern.edu>
Date: Thu, 25 Jul 2019 16:12:25 -0500
Subject: [PATCH] redo dict call
---
workflow/scripts/pool_and_psuedoreplicate.py | 12 +++++++-----
1 file changed, 7 insertions(+), 5 deletions(-)
diff --git a/workflow/scripts/pool_and_psuedoreplicate.py b/workflow/scripts/pool_and_psuedoreplicate.py
index a0a6a98..cdf4d5b 100644
--- a/workflow/scripts/pool_and_psuedoreplicate.py
+++ b/workflow/scripts/pool_and_psuedoreplicate.py
@@ -230,17 +230,19 @@ def generate_design(paired, cutoff_ratio, design_df, cwd, no_reps, no_unique_con
design_new_df.at[3, 'tag_align'] = design_new_df.at[0, 'tag_align']
# Make 2 self psuedoreplicates
- pool_pseudoreplicates_dict = {}
- for rep, tag_file in zip(design_df['replicate'], design_df['tag_align']):
+ self_pseudoreplicates_dict = {}
+ for rep, tag_file in zip(design_df['replicate'], design_df['tag_align']):
replicate_prefix = experiment_id + '_' + str(rep)
- pool_pseudoreplicates_dict[rep] = \
- self_psuedoreplication(tag_file, replicate_prefix, paired)
+ self_pseudoreplicates_dict = self_psuedoreplication(tag_file, replicate_prefix, paired)
+
# Update design to include new self pseudo replicates
- for rep, pseudorep_file in pool_pseudoreplicates_dict.items():
+ pool_pseudoreplicates_dict = {}
+ for rep, pseudorep_file in self_pseudoreplicates_dict.items():
path_to_file = cwd + '/' + pseudorep_file
replicate = rep + 1
design_new_df.loc[replicate, 'tag_align'] = path_to_file
+ pool_pseudoreplicates_dict[replicate] = path_to_file
# Drop index column
design_new_df.drop(labels='index', axis=1, inplace=True)
--
GitLab