Resolve "annotate peaks" (!57) · Merge requests · BICF / Astrocyte / chipseq_analysis · GitLab

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Merged Resolve "annotate peaks"

47-AnnotatePeaks into master

Merged Jeremy Mathews requested to merge 47-AnnotatePeaks into master 5 years ago

Closes #47 (closed) Change Annotate peaks step to call reference from gencode gtf files instead of TxDb and org libraries.

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If you've fixed a bug or added code that should be tested, add tests!
CHANGELOG.md is updated

Edited 5 years ago by Jeremy Mathews

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Jeremy Mathews changed milestone to %1.1.1 5 years ago

changed milestone to %1.1.1
Jeremy Mathews added enhancement label 5 years ago

added enhancement label
Jeremy Mathews changed the description 5 years ago

changed the description
V

Venkat Malladi @venkat.malladi · 5 years ago

Owner

@s189701 can we move the gtf that we are using to be passed from nextflow and as an option to R instead of hard coding it so that we can generalize for other organisms?
Jeremy Mathews added 1 commit 5 years ago
added 1 commit

5e5202b0 - Fix and test use of GTF and Genename params

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Jeremy Mathews @s189701 · 5 years ago

Author Developer

Consider it done.
Jeremy Mathews added 1 commit 5 years ago
added 1 commit

ebaa8534 - Fix biohpc.config

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Venkat Malladi merged 5 years ago

merged
Venkat Malladi mentioned in commit c505f1cb 5 years ago

mentioned in commit c505f1cb

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