Commits · c84c66cc5bb388262ee1eda181feac94449eef3f · Astrocyte / Workflows / BICF / chipseq_analysis

Feb 12, 2020
- Solve the minimum fragment length to be at least 50bp or through an error. · c84c66cc
  Venkat Malladi authored 5 years ago
  
  c84c66cc
Feb 11, 2020
- Merge branch 'master' into 26-negative-fraglength · 08afbefe
  Venkat Malladi authored 5 years ago
  
  08afbefe
Jan 28, 2020
- Merge branch '68-remove_artifacts' into 'master' · 60b877d9
  Venkat Malladi authored 5 years ago
```
Remove artifacts.

Closes #68

See merge request BICF/Astrocyte/chipseq_analysis!61
```
  60b877d9
Sep 26, 2019
- Remove artifacts. · 536c1d3a
  Venkat Malladi authored 5 years ago
  
  536c1d3a
Sep 17, 2019

Merge branch '65-test_failing' into 'master' · f8e4853b

Venkat Malladi authored 5 years ago

Update paired-end diff to skip this test.

Closes #65

See merge request BICF/Astrocyte/chipseq_analysis!60

f8e4853b

Sep 16, 2019
- Update changelog. · 968f5bb3
  Venkat Malladi authored 5 years ago
  
  968f5bb3
- Update paired-end diff to skip this test. · 49615e08
  Venkat Malladi authored 5 years ago
  
  49615e08
Sep 12, 2019

Merge branch '30-XCor' into 'master' · 2d542075

Venkat Malladi authored 5 years ago

Resolve "xcor.py, --random-source fails if file is too small"

Closes #30

See merge request BICF/Astrocyte/chipseq_analysis!58

2d542075

Sep 03, 2019
- Update cross correlation and related tests · a0a02958
  Jeremy Mathews authored 5 years ago
  
  a0a02958
Aug 16, 2019
- add -p option for plot profile · 1cd03ed1
  Jeremy Mathews authored 5 years ago
  
  1cd03ed1
- Update tests · 43a96c42
  Jeremy Mathews authored 5 years ago
  
  43a96c42
Aug 14, 2019
- Make Multiqc using singularity · 92ed4283
  Jeremy Mathews authored 5 years ago
  
  92ed4283
- Update tests for xcor change · ef9a113d
  Jeremy Mathews authored 5 years ago
  
  ef9a113d
Aug 12, 2019
- Merge branch '47-AnnotatePeaks' into 'master' · c505f1cb
  Venkat Malladi authored 5 years ago
```
Resolve "annotate peaks"

Closes #47

See merge request BICF/Astrocyte/chipseq_analysis!57
```
  c505f1cb
Aug 08, 2019
- Fix biohpc.config · ebaa8534
  Jeremy Mathews authored 5 years ago
  
  ebaa8534
Aug 06, 2019
- Fix and test use of GTF and Genename params · 5e5202b0
  Jeremy Mathews authored 5 years ago
  
  5e5202b0
Aug 01, 2019
- Fix PE annotate peaks assertion in pytest · d716364d
  Jeremy Mathews authored 5 years ago
  
  d716364d
Jul 31, 2019
- Change Annotate Peaks to GTF file reference · b880088c
  Jeremy Mathews authored 5 years ago
  
  b880088c
Jul 30, 2019

Merge branch '58-single-rep' into 'master' · f6036083

Venkat Malladi authored 5 years ago

Resolve "Single control or experiment fails at call peaks macs"

Closes #58

See merge request BICF/Astrocyte/chipseq_analysis!54

f6036083

Jul 26, 2019
- Final Revision: Remove If-Else Statement (Redundant) · a9bfa737
  Jeremy Mathews authored 5 years ago
  
  a9bfa737
Jul 25, 2019
- make df from dict · 596e145d
  Jeremy Mathews authored 5 years ago
  
  596e145d
- new run · c412f90f
  Jeremy Mathews authored 5 years ago
  
  c412f90f
- fix spacing again · e4e239be
  Jeremy Mathews authored 5 years ago
  
  e4e239be
- fix spacing · 254ac382
  Jeremy Mathews authored 5 years ago
  
  254ac382
- redo dict call · 266c57a7
  Jeremy Mathews authored 5 years ago
  
  266c57a7
- redo · cecc9ac6
  Jeremy Mathews authored 5 years ago
  
  cecc9ac6
- change design_df · 57872294
  Jeremy Mathews authored 5 years ago
  
  57872294
- print error · d21683d4
  Jeremy Mathews authored 5 years ago
  
  d21683d4
- Re order pool and pseudoreplicates · e6c55f50
  Jeremy Mathews authored 5 years ago
  
  e6c55f50
Jul 24, 2019
- update reference genome to gtf · 1dd9f5e4
  Jeremy Mathews authored 5 years ago
  
  1dd9f5e4
- change self dict to pool dict · 96b4d6ed
  Jeremy Mathews authored 5 years ago
  
  96b4d6ed
Jul 23, 2019
- Fix final section indentation · bf79da87
  Jeremy Mathews authored 5 years ago
  
  bf79da87
- pool indentation · f6b5c87b
  Jeremy Mathews authored 5 years ago
  
  f6b5c87b
- fix indentation · 0853d200
  Jeremy Mathews authored 5 years ago
  
  0853d200
Jul 22, 2019
- Merge branch 'patch-1' into 'master' · 38f8f83a
  Venkat Malladi authored 5 years ago
```
Update test_generate_software_versions.py

See merge request BICF/Astrocyte/chipseq_analysis!56
```
  38f8f83a
- update CHANGELOG · 93a8086a
  Jeremy Mathews authored 5 years ago
  
  93a8086a
Jul 19, 2019
- Update test_generate_software_versions.py · dce709b4
  Jeremy Mathews authored 5 years ago
  
  dce709b4
- revert to last version · 39092668
  Jeremy Mathews authored 5 years ago
  
  39092668
- Update pool and psuedoreplicates · a202eec2
  Jeremy Mathews authored 5 years ago
  
  a202eec2
- Fix merge conflicts · cf2262ba
  Jeremy Mathews authored 5 years ago
  
  cf2262ba