Commits · b755c15868435a507e1c2f600cb19be79842bdbe · Astrocyte / Workflows / BICF / chipseq_analysis

Aug 20, 2024
- Using py36 docker with no-conda env and updating related files. Use nextflow 19 · b755c158
  Thamer Alsulaiman authored 7 months ago
  
  b755c158
Jul 30, 2024
- Added argument to call of ifEmpty() · f79d991e
  Thamer Alsulaiman authored 8 months ago
  
  f79d991e
Jul 28, 2024
- Use 256 queue only for trim reads step to avoid samtools call in map_reads.py:wq · 967242be
  Thamer Alsulaiman authored 8 months ago
  
  967242be
Jul 22, 2024
- Add missing port number to container image tags. · 6c0883b3
  Felix Perez authored 8 months ago
  
  6c0883b3
- Rewrite container image references in the workflow config files to use the... · dd5d9a37
  Felix Perez authored 8 months ago
```
Rewrite container image references in the workflow config files to use the official container registry.
```
  dd5d9a37
Jul 17, 2024

Added new Docker file for motif search (named meme-5.5.4) installed from... · 2430d169

Added new Docker file for motif search (named meme-5.5.4) installed from source, with all the necessary changes to use the new container for motif search. Updated the command line arguments for meme-chip to use v5.x syntax.

2430d169

Jul 16, 2024
- FP push final changes to repo before moving. · f1b61220
  Felix Perez authored 8 months ago
  
  f1b61220
May 15, 2024
- Push in-development containerized workflow · fbc41119
  Felix Perez authored 10 months ago
  
  fbc41119
Aug 06, 2020
- update peak annotation pytest · c78024de
  Spencer Barnes authored 4 years ago
  
  c78024de
Aug 04, 2020
- add test to ensure symbol column of peak annotation is not empty · 375b9e56
  Spencer Barnes authored 4 years ago
  
  375b9e56
Aug 03, 2020
- fix peak annotation r script · b5c9ff2e
  Spencer Barnes authored 4 years ago
  
  b5c9ff2e
Jun 22, 2020
- Update reference and version. · e6b416e5
  Venkat Malladi authored 4 years ago
  
  publish_1.1.2
  
  e6b416e5
Jun 19, 2020
- Add in pipelinetracking. · a34ccd98
  Venkat Malladi authored 4 years ago
  
  a34ccd98
Apr 23, 2020
- Update to 1.1.1. · ea6b9d45
  Venkat Malladi authored 4 years ago
  
  publish_1.1.1
  
  ea6b9d45
Apr 22, 2020
- Add in singularity version is multiqc report. · 5626a6ae
  Venkat Malladi authored 4 years ago
  
  5626a6ae
Apr 21, 2020
- Getting Ready for release 1.1.0 · 3247bebb
  Venkat Malladi authored 4 years ago
  
  3247bebb
Apr 20, 2020
- Change to path. · 16c9a6f6
  Venkat Malladi authored 4 years ago
  
  16c9a6f6
- Fix serach of name. · 9167ee54
  Venkat Malladi authored 4 years ago
  
  9167ee54
Apr 17, 2020
- remove merge conlfict lines. · ad6dd0f2
  Venkat Malladi authored 4 years ago
  
  ad6dd0f2
- Only get the pooled files. · c86c2e79
  Venkat Malladi authored 4 years ago
  
  c86c2e79
- Fix parsing of options and spacing. · 08d9f08a
  Venkat Malladi authored 4 years ago
  
  08d9f08a
Apr 16, 2020
- Make gtf taken an option · 61db854a
  Venkat Malladi authored 4 years ago
  
  61db854a
Mar 25, 2020
- Update testing for paried-end. · 7bfeb98a
  Venkat Malladi authored 5 years ago
  
  7bfeb98a
Mar 24, 2020
- Fix option parsing. · 0307bd09
  Venkat Malladi authored 5 years ago
  
  0307bd09
Mar 23, 2020
- Fix spacing. · 807f5ec0
  Venkat Malladi authored 5 years ago
  
  807f5ec0
- Test that size is greater than 0. · e952181e
  Venkat Malladi authored 5 years ago
  
  e952181e
- Check if file exists and not empty. · 7df1a370
  Venkat Malladi authored 5 years ago
  
  7df1a370
- Update file paths. · f76f9efd
  Venkat Malladi authored 5 years ago
  
  f76f9efd
Mar 21, 2020
- Add usage statement. · 8fba6bd9
  Venkat Malladi authored 5 years ago
  
  8fba6bd9
- Update documentation and use GTF file. · d9e3b2b4
  Venkat Malladi authored 5 years ago
  
  d9e3b2b4
Mar 20, 2020
- Remove redundant test. · f6951a42
  Venkat Malladi authored 5 years ago
  
  f6951a42
- Unit test other functions. · a79a5aac
  Venkat Malladi authored 5 years ago
  
  a79a5aac
Mar 19, 2020
- Add new parrallel unit test. · bc3cbdee
  Venkat Malladi authored 5 years ago
  
  bc3cbdee
- testing using bats. · 96612335
  Venkat Malladi authored 5 years ago
  
  96612335
Mar 02, 2020
- Add before script. · 1a300201
  Venkat Malladi authored 5 years ago
  
  1a300201
Mar 01, 2020
- Update to pool. · fa0a8c48
  Venkat Malladi authored 5 years ago
  
  fa0a8c48
Feb 29, 2020
- Update testing to check 0 value. · e8746395
  Venkat Malladi authored 5 years ago
  
  e8746395
- Update testing to check 1 value. · 4dae1632
  Venkat Malladi authored 5 years ago
  
  4dae1632
- Fix assert to check if file name in list. · f8e5fa23
  Venkat Malladi authored 5 years ago
  
  f8e5fa23
- Update return. · 38ddd7b3
  Venkat Malladi authored 5 years ago
  
  38ddd7b3