Update testing for paried-end.

.gitlab-ci.yml

@@ -56,8 +56,6 @@ single_end_single_control:
 single_end_diff:
   stage: multiple
   only:
-    - branches
-  except:
     - master
   script:
   - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' --astrocyte false
@@ -66,6 +64,8 @@ single_end_diff:
 
 paired_end_diff:
   only:
+    - branches
+  except:
     - master
   stage: multiple
   script:

workflow/tests/test_diff_peaks.py

@@ -71,4 +71,4 @@ def test_diffbind_pairedend_single_rep():
         assert os.path.exists(os.path.join(test_output_path, 'ENCSR729LGA_vs_ENCSR757EMK_diffbind.bed'))
         diffbind_file = test_output_path + 'ENCSR729LGA_vs_ENCSR757EMK_diffbind.csv'
     assert os.path.exists(diffbind_file)
-    assert utils.count_lines(diffbind_file) >= 65182
+    assert utils.count_lines(diffbind_file) >= 65124