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Commit ea6b9d45 authored by Venkat Malladi's avatar Venkat Malladi
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Update to 1.1.1.

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All notable changes to this project will be documented in this file. All notable changes to this project will be documented in this file.
## [publish_1.1.0 ] - 2020-04-21 ## [publish_1.1.1 ] - 2020-04-23
### Added ### Added
- Add Nextflow to references.md - Add Nextflow to references.md
- Add test data for test_pool_and_pseudoreplicate - Add test data for test_pool_and_pseudoreplicate
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# **ChIP-seq Manual** # **ChIP-seq Manual**
## Version 1.1.0 ## Version 1.1.1
## April 22, 2020 ## April 22, 2020
# BICF ChIP-seq Pipeline # BICF ChIP-seq Pipeline
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* Ewels P., Magnusson M., Lundin S. and Käller M. 2016. MultiQC: Summarize analysis results for multiple tools and samples in a single report. Bioinformatics 32(19): 3047–3048. doi:[10.1093/bioinformatics/btw354](https://dx.doi.org/10.1093/bioinformatics/btw354) * Ewels P., Magnusson M., Lundin S. and Käller M. 2016. MultiQC: Summarize analysis results for multiple tools and samples in a single report. Bioinformatics 32(19): 3047–3048. doi:[10.1093/bioinformatics/btw354](https://dx.doi.org/10.1093/bioinformatics/btw354)
17. **BICF ChIP-seq Analysis Workflow**: 17. **BICF ChIP-seq Analysis Workflow**:
* Spencer D. Barnes, Holly Ruess, Jeremy A. Mathews, Beibei Chen, and Venkat S. Malladi. 2020. BICF ChIP-seq Analysis Workflow (publish_1.1.0). Zenodo. doi:[10.5281/zenodo.3759481](https://doi.org/10.5281/zenodo.3759481) * Spencer D. Barnes, Holly Ruess, Jeremy A. Mathews, Beibei Chen, and Venkat S. Malladi. 2020. BICF ChIP-seq Analysis Workflow (publish_1.1.1). Zenodo. doi:[10.5281/zenodo.3759481](https://doi.org/10.5281/zenodo.3759481)
18. **Nextflow**: 18. **Nextflow**:
* Di Tommaso, P., Chatzou, M., Floden, E. W., Barja, P. P., Palumbo, E., and Notredame, C. 2017. Nextflow enables reproducible computational workflows. Nature biotechnology, 35(4), 316. * Di Tommaso, P., Chatzou, M., Floden, E. W., Barja, P. P., Palumbo, E., and Notredame, C. 2017. Nextflow enables reproducible computational workflows. Nature biotechnology, 35(4), 316.
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...@@ -25,7 +25,7 @@ manifest { ...@@ -25,7 +25,7 @@ manifest {
name = 'chipseq_analysis' name = 'chipseq_analysis'
description = 'BICF ChIP-seq Analysis Workflow.' description = 'BICF ChIP-seq Analysis Workflow.'
homePage = 'https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis' homePage = 'https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis'
version = '1.1.0' version = '1.1.1'
mainScript = 'main.nf' mainScript = 'main.nf'
nextflowVersion = '>=0.31.0' nextflowVersion = '>=0.31.0'
} }
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