Rewrite container image references in the workflow config files to use the official container registry.

Added new Docker file for motif search (named meme-5.5.4) installed from...

See merge request !1

Added new Docker file for motif search (named meme-5.5.4) installed from source, with all the necessary changes to use the new container for motif search. Updated the command line arguments for meme-chip to use v5.x syntax.

Merge branch 'containerized' of git.biohpc.swmed.edu:s219741/chipseq-analysis-containerized into containerized

Conflicts:
	building/docker/motif-search/Dockerfile

Release 1.1.3

See merge request BICF/Astrocyte/chipseq_analysis!73

Issue3087 annotation fix

Closes #87

See merge request BICF/Astrocyte/chipseq_analysis!72

Update astrocyte to 0.3.1

Closes #84

See merge request BICF/Astrocyte/chipseq_analysis!71

Add in pipelinetracking.

See merge request BICF/Astrocyte/chipseq_analysis!70

Resolve "Rename Plot profile to be consistent with naming"

Closes #75

See merge request BICF/Astrocyte/chipseq_analysis!67

Resolve "Paired-end Diffbind peaks gives different answer" after changing random

Closes #78

See merge request BICF/Astrocyte/chipseq_analysis!69

Ci merge test

Closes #79 and #80

See merge request BICF/Astrocyte/chipseq_analysis!68