Commits · 928b56da9ffd1767af1e60e9b9e629d6c346d24a · Astrocyte / Workflows / BICF / chipseq_analysis

Mar 15, 2018
- Fix config. · 928b56da
  Venkat Malladi authored 7 years ago
  
  928b56da
- Update nextflow version and reports. · a32a7b3a
  Venkat Malladi authored 7 years ago
  
  a32a7b3a
Feb 15, 2018
- Update to include astrocyte. · e6431802
  Venkat Malladi authored 7 years ago
  
  e6431802
- Fix path. · 14a10061
  Venkat Malladi authored 7 years ago
  
  14a10061
- Update readme and add in coverage. · c6c647d8
  Venkat Malladi authored 7 years ago
  
  c6c647d8
Feb 14, 2018
- Add in paired-end data test. · 9783455d
  Venkat Malladi authored 7 years ago
  
  9783455d
- Fix acceptance test to integration tests. · 5b44e9ab
  Venkat Malladi authored 7 years ago
  
  5b44e9ab
- Fix typo. · 32977563
  Venkat Malladi authored 7 years ago
  
  32977563
- Update testing setup. · bad714b4
  Venkat Malladi authored 7 years ago
  
  bad714b4
Jan 13, 2018
- Add in convert reads. · f5b86f8f
  Venkat Malladi authored 7 years ago
  
  f5b86f8f
- Fix call to check output. · c46ecd9b
  Venkat Malladi authored 7 years ago
  
  c46ecd9b
Jan 12, 2018
- Fix map qc for paired-end data. · d03b78fc
  Venkat Malladi authored 7 years ago
  
  d03b78fc
Jan 11, 2018
- Fix test. · 28d2cd11
  Venkat Malladi authored 7 years ago
  
  28d2cd11
Jan 10, 2018
- Fix control file path. · 56623415
  Venkat Malladi authored 7 years ago
  
  56623415
- Fix single replicate issue. · 481f6287
  Venkat Malladi authored 7 years ago
  
  481f6287
Jan 05, 2018
- Fix error if only a single replciate control used. · e991c627
  Venkat Malladi authored 7 years ago
  
  e991c627
Nov 29, 2017
- Fix order of loading phantompeakqualtools. · 07d73df9
  Venkat Malladi authored 7 years ago
  
  07d73df9
Nov 21, 2017
- Fix naive test. · dfff053e
  Venkat Malladi authored 7 years ago
  
  dfff053e
Nov 20, 2017
- Updated split experiment pool objs function. · 44146d5d
  Venkat Malladi authored 7 years ago
  
  44146d5d
- Fix assignment for multiple experiments. · ebca57ad
  Venkat Malladi authored 7 years ago
  
  ebca57ad
- Fix index name that was forced in after adding at look up for single replicate. · df38a05a
  Venkat Malladi authored 7 years ago
  
  df38a05a
- Fix underscore inconsistency. · 2f1be20b
  Venkat Malladi authored 7 years ago
  
  2f1be20b
- Fix typo in paired end file. · 38db72ab
  Venkat Malladi authored 7 years ago
  
  38db72ab
- Merge branch '7-macs2-peaks' into 'master' · 7a02b617
  Venkat Malladi authored 7 years ago
```
Resolve "Add in Macs2 support"

Closes #7

See merge request !13
```
  7a02b617
- Fix number of peaks. · 19be28f4
  Venkat Malladi authored 7 years ago
  
  19be28f4
Nov 19, 2017
- Fix overlap peaks peak count. · 6d4a7258
  Venkat Malladi authored 7 years ago
  
  6d4a7258
- Merge branch '7-macs2-peaks' of... · 119136ab
  Venkat Malladi authored 7 years ago
```
Merge branch '7-macs2-peaks' of git.biohpc.swmed.edu:BICF/Astrocyte/chipseq_analysis into 7-macs2-peaks
```
  119136ab
- Remove extra sort from rescaling causing issues. · 763931b8
  Venkat Malladi authored 7 years ago
  
  763931b8
Nov 18, 2017
- Change string to numeric. · 75842ebe
  Venkat Malladi authored 7 years ago
  
  75842ebe
- Change string to numeric for number of peaks. · f02fccec
  Venkat Malladi authored 7 years ago
  
  f02fccec
- Removed hard coded file path when testing. · 9ca5c5ff
  Venkat Malladi authored 7 years ago
  
  9ca5c5ff
Nov 17, 2017
- Fix test for python style. · 49b82cd2
  Venkat Malladi authored 7 years ago
  
  49b82cd2
- Add test for checking overlap of peaks. · 717df916
  Venkat Malladi authored 7 years ago
  
  717df916
- Add in test peak calling step. · 83ca8c09
  Venkat Malladi authored 7 years ago
  
  83ca8c09
- Fix the python erros. · 977b3a31
  Venkat Malladi authored 7 years ago
  
  977b3a31
- Fix errors in overlap peaks and design generation. · 225c1fd0
  Venkat Malladi authored 7 years ago
  
  225c1fd0
- Fix variable idenfitication of preDiffDesign. · 163c967f
  Venkat Malladi authored 7 years ago
  
  163c967f
- Remove temp narrowPeak files. · 9a6d319d
  Venkat Malladi authored 7 years ago
  
  9a6d319d
- Fix p-value signal names. · 42c15d75
  Venkat Malladi authored 7 years ago
  
  42c15d75
- Fix typo of alias of scor function. · 4da6aee0
  Venkat Malladi authored 7 years ago
  
  4da6aee0