Merge branch '7-macs2-peaks' into 'master' (7a02b617) · Commits · Astrocyte / Workflows / BICF / chipseq_analysis · GitLab

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7a02b617

Commit 7a02b617 authored 7 years ago by

Venkat Malladi

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Merge branch '7-macs2-peaks' into 'master'

Resolve "Add in Macs2 support"

Closes #7

See merge request !13

parents 52095af0 19be28f4

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astrocyte_pkg.yml 3 additions, 0 deletions

astrocyte_pkg.yml
workflow/conf/biohpc.config 26 additions, 6 deletions

workflow/conf/biohpc.config
workflow/main.nf 77 additions, 5 deletions

workflow/main.nf
workflow/scripts/call_peaks_macs.py 271 additions, 0 deletions

workflow/scripts/call_peaks_macs.py
workflow/scripts/overlap_peaks.py 210 additions, 0 deletions

workflow/scripts/overlap_peaks.py
workflow/scripts/pool_and_psuedoreplicate.py 7 additions, 4 deletions

workflow/scripts/pool_and_psuedoreplicate.py
workflow/scripts/utils.py 57 additions, 0 deletions

workflow/scripts/utils.py
workflow/scripts/xcor.py 4 additions, 2 deletions

workflow/scripts/xcor.py
workflow/tests/test_call_peaks_macs.py 20 additions, 0 deletions

workflow/tests/test_call_peaks_macs.py
workflow/tests/test_overlap_peaks.py 43 additions, 0 deletions

workflow/tests/test_overlap_peaks.py

with 718 additions and 17 deletions

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