Skip to content
Snippets Groups Projects
Commit 49b82cd2 authored by Venkat Malladi's avatar Venkat Malladi
Browse files

Fix test for python style.

parent 717df916
Branches
Tags
No related merge requests found
#!/usr/bin/env python3
import pytest
import pandas as pd
from io import StringIO
import os
import utils
import call_peaks_macs
test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
'/../output/callPeaksMACS/'
......
......@@ -4,6 +4,7 @@ import pytest
import pandas as pd
from io import StringIO
import os
import utils
import overlap_peaks
test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
......@@ -26,7 +27,7 @@ def design_diff():
def test_check_update_design(design_diff):
new_design = overlap_peaks.update_design(design_diff)
assert df.shape[0] == 2
assert new_design.shape[0] == 2
assert new_design.loc[0, 'control_bam_reads'] == "B_1.bam"
assert new_design.loc[0, 'peak_caller'] == "bed"
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment