diff --git a/workflow/tests/test_call_peaks_macs.py b/workflow/tests/test_call_peaks_macs.py index ebc8bb13110d18cd565bf5a68e46ad9f0dcc209d..e9a876dd33e6700f63ff413860e4c686ff64bbd6 100644 --- a/workflow/tests/test_call_peaks_macs.py +++ b/workflow/tests/test_call_peaks_macs.py @@ -1,11 +1,8 @@ #!/usr/bin/env python3 import pytest -import pandas as pd -from io import StringIO import os import utils -import call_peaks_macs test_output_path = os.path.dirname(os.path.abspath(__file__)) + \ '/../output/callPeaksMACS/' diff --git a/workflow/tests/test_overlap_peaks.py b/workflow/tests/test_overlap_peaks.py index 6305d3793c0100b9449771c164ec0e3e5b08071d..524dd639c57e4a19f283ec5a1b3d4768e1922c9f 100644 --- a/workflow/tests/test_overlap_peaks.py +++ b/workflow/tests/test_overlap_peaks.py @@ -4,6 +4,7 @@ import pytest import pandas as pd from io import StringIO import os +import utils import overlap_peaks test_output_path = os.path.dirname(os.path.abspath(__file__)) + \ @@ -26,7 +27,7 @@ def design_diff(): def test_check_update_design(design_diff): new_design = overlap_peaks.update_design(design_diff) - assert df.shape[0] == 2 + assert new_design.shape[0] == 2 assert new_design.loc[0, 'control_bam_reads'] == "B_1.bam" assert new_design.loc[0, 'peak_caller'] == "bed"