From 49b82cd2b0476355c7634b3fb8dc99e8c4a064f2 Mon Sep 17 00:00:00 2001
From: Venkat Malladi <venkat.malladi@utsouthwestern.edu>
Date: Fri, 17 Nov 2017 22:49:48 -0600
Subject: [PATCH] Fix test for python style.
---
workflow/tests/test_call_peaks_macs.py | 3 ---
workflow/tests/test_overlap_peaks.py | 3 ++-
2 files changed, 2 insertions(+), 4 deletions(-)
diff --git a/workflow/tests/test_call_peaks_macs.py b/workflow/tests/test_call_peaks_macs.py
index ebc8bb1..e9a876d 100644
--- a/workflow/tests/test_call_peaks_macs.py
+++ b/workflow/tests/test_call_peaks_macs.py
@@ -1,11 +1,8 @@
#!/usr/bin/env python3
import pytest
-import pandas as pd
-from io import StringIO
import os
import utils
-import call_peaks_macs
test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
'/../output/callPeaksMACS/'
diff --git a/workflow/tests/test_overlap_peaks.py b/workflow/tests/test_overlap_peaks.py
index 6305d37..524dd63 100644
--- a/workflow/tests/test_overlap_peaks.py
+++ b/workflow/tests/test_overlap_peaks.py
@@ -4,6 +4,7 @@ import pytest
import pandas as pd
from io import StringIO
import os
+import utils
import overlap_peaks
test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
@@ -26,7 +27,7 @@ def design_diff():
def test_check_update_design(design_diff):
new_design = overlap_peaks.update_design(design_diff)
- assert df.shape[0] == 2
+ assert new_design.shape[0] == 2
assert new_design.loc[0, 'control_bam_reads'] == "B_1.bam"
assert new_design.loc[0, 'peak_caller'] == "bed"
--
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