Commits · 68efa3e4fe13401fd470f06c16f1869c98dcca09 · Strand Lab / sc-TissueMapper_Pr

Nov 03, 2018
- Merge devleop into StressCompare · 68efa3e4
  Gervaise Henry authored 6 years ago
  
  68efa3e4
- Increase stringency for pan Epi and St DEG calc to 75% of pops and 2FC · c0718701
  Gervaise Henry authored 6 years ago
  
  c0718701
- Update README.md · c3a845d3
  Gervaise Henry authored 6 years ago
  
  c3a845d3
- Update readme.md · 1bd6628c
  Gervaise Henry authored 6 years ago
  
  1bd6628c
Nov 02, 2018
- Make DEG try · 31988046
  Gervaise Henry authored 6 years ago
  
  31988046
- Fix DEG on DS.D17 · e1789e83
  Gervaise Henry authored 6 years ago
  
  e1789e83
- Don't do cell cycle analysis for DS.D17 · ef38fbfd
  Gervaise Henry authored 6 years ago
  
  ef38fbfd
- Revert to high RAM nodes and new R/3.4.1 · 6dad81ef
  Gervaise Henry authored 6 years ago
  
  6dad81ef
- Revert to stable old R/3.4.1 · 71d62d0f
  Gervaise Henry authored 6 years ago
  
  71d62d0f
- Allow DS bash scripts to use any node · 4d30cda6
  Gervaise Henry authored 6 years ago
  
  4d30cda6
- Use rebuilt R/3.4.1 · ed753d6e
  Gervaise Henry authored 6 years ago
  
  ed753d6e
- Update bash scripts, link data and use new R/3.4.1 · 5cb8b844
  Gervaise Henry authored 6 years ago
  
  5cb8b844
- Fix LE DEG generation for Pd analysis · 5af3d377
  Gervaise Henry authored 6 years ago
  
  5af3d377
- Fix LE comparison for DEG for DS.D17 · 3861d456
  Gervaise Henry authored 6 years ago
  
  3861d456
- Add DEG generation to ds.D17 · 75c4e6ce
  Gervaise Henry authored 6 years ago
  
  75c4e6ce
Oct 17, 2018
- Add % var to PC plots · 1399756b
  Gervaise Henry authored 6 years ago
  
  1399756b
- Finalize? stress comparisson (van den Brink) code · a684c35f
  Gervaise Henry authored 6 years ago
  
  a684c35f
Oct 16, 2018
- Merge remote-tracking branch 'origin/develop' into StressCompare · 52315a1a
  Gervaise Henry authored 6 years ago
  
  52315a1a
Oct 15, 2018
- Merge branch 'develop' into 'master' · 8713aaa9
  Gervaise Henry authored 6 years ago
```
Merge ds_D17 from develop into master

See merge request !4
```
  1.1.0
  
  8713aaa9
Oct 09, 2018
- Fix min st cluster size for QuSAGE · 68fdeb80
  Gervaise Henry authored 6 years ago
  
  68fdeb80
- Merge branch 'ds.D17' into 'develop' · dba99684
  Gervaise Henry authored 6 years ago
```
Merge completed D17 downsample in to develop

See merge request !3
```
  dba99684
- Remove depreciated code · 790d56ab
  Gervaise Henry authored 6 years ago
  
  790d56ab
Oct 08, 2018
- Add rdata save to D17 downsample aggr · 751d0a65
  Gervaise Henry authored 6 years ago
  
  751d0a65
- Add D17 downsample aggrggrigate code · b326f2a7
  Gervaise Henry authored 6 years ago
  
  b326f2a7
Oct 05, 2018
- Remove low gene filter for intitial load · 2a275403
  Gervaise Henry authored 6 years ago
  
  2a275403
- Remove low end cutoff for cell with low gene content · 51a83364
  Gervaise Henry authored 6 years ago
  
  51a83364
Oct 04, 2018
- Remove other merge with NE · ec340b65
  Gervaise Henry authored 6 years ago
  
  ec340b65
- Remove other table with NE · 051baf70
  Gervaise Henry authored 6 years ago
  
  051baf70
- Remove NE highlight · b214eeea
  Gervaise Henry authored 6 years ago
  
  b214eeea
- Remove NE table · 17626741
  Gervaise Henry authored 6 years ago
  
  17626741
- Remove merge with NE which was causing error · b4031301
  Gervaise Henry authored 6 years ago
  
  b4031301
- Try and fix factor error with merge with set ident · fbd3525e
  Gervaise Henry authored 6 years ago
  
  fbd3525e
- Try to fix occational setident issue before merge with try · 6f83e665
  Gervaise Henry authored 6 years ago
  
  6f83e665
- Fix post stress res · da2d2232
  Gervaise Henry authored 6 years ago
  
  da2d2232
- Up post stress resolution to 1 · 45066098
  Gervaise Henry authored 6 years ago
  
  45066098
- Remove 384GB node · acbcd567
  Gervaise Henry authored 6 years ago
  
  acbcd567
- Remove 128GB node · bfc1c788
  Gervaise Henry authored 6 years ago
  
  bfc1c788
- Allow DS.D17 bash script to be sbatch'ed to 128BG node also · 86d0f7b9
  Gervaise Henry authored 6 years ago
  
  86d0f7b9
- Merge branch 'develop' into ds.D17 · 8e5d7033
  Gervaise Henry authored 6 years ago
  
  8e5d7033
- Make cell cycle violin and ridge plots for specific genes a try · 098fe606
  Gervaise Henry authored 6 years ago
  
  098fe606