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Commit da2d2232 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix post stress res

parent 45066098
2 merge requests!4Merge ds,!3Merge completed D17 downsample in to develop
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r.scripts/sc-TissueMapper_RUN.DS_D17.R
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...@@ -175,7 +175,7 @@ if (opt$st==TRUE){ ...@@ -175,7 +175,7 @@ if (opt$st==TRUE){
pc.use.poststress <- results[[3]] pc.use.poststress <- results[[3]]
rm(results) rm(results)
sc10x <- scCluster(sc10x,pc.use=pc.use.poststress,res.use=0.5,folder="post.stress",red="pca") sc10x <- scCluster(sc10x,pc.use=pc.use.poststress,res.use=opt$res.poststress,folder="post.stress",red="pca")
} }
gene.set1 <- read_delim("./genesets/genes.deg.Epi.csv",",",escape_double=FALSE,trim_ws=TRUE,col_names=TRUE) gene.set1 <- read_delim("./genesets/genes.deg.Epi.csv",",",escape_double=FALSE,trim_ws=TRUE,col_names=TRUE)
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