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Commit 45066098 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Up post stress resolution to 1

parent acbcd567
2 merge requests!4Merge ds,!3Merge completed D17 downsample in to develop
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r.scripts/sc-TissueMapper_RUN.DS_D17.R
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...@@ -109,7 +109,7 @@ option_list=list( ...@@ -109,7 +109,7 @@ option_list=list(
make_option("--st",action="store",default=TRUE,type='logical',help="Remove stressed cells?"), make_option("--st",action="store",default=TRUE,type='logical',help="Remove stressed cells?"),
make_option("--stg",action="store",default="dws",type='character',help="Geneset to use for stress ID"), make_option("--stg",action="store",default="dws",type='character',help="Geneset to use for stress ID"),
make_option("--cut.stress",action="store",default=0.9,type='numeric',help="Cutoff for stress score"), make_option("--cut.stress",action="store",default=0.9,type='numeric',help="Cutoff for stress score"),
make_option("--res.poststress",action="store",default=0.5,type='numeric',help="Resolution to cluster, post-stress"), make_option("--res.poststress",action="store",default=1,type='numeric',help="Resolution to cluster, post-stress"),
make_option("--cut.ne",action="store",default=0.999,type='numeric',help="Cutoff for NE score") make_option("--cut.ne",action="store",default=0.999,type='numeric',help="Cutoff for NE score")
) )
opt=parse_args(OptionParser(option_list=option_list)) opt=parse_args(OptionParser(option_list=option_list))
......
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