Skip to content
Snippets Groups Projects
Commit e1789e83 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
Browse files

Fix DEG on DS.D17

parent ef38fbfd
1 merge request!6Develop
Hide whitespace changes
Inline Side-by-side
r.scripts/sc-TissueMapper_RUN.DS_D17.R
+ 5
− 5
View file @ e1789e83
......@@ -352,12 +352,12 @@ genes.deg.Stress <- scDEG(sc10x.Stress,i="Stress",g.1="Stress",g.2="ALL",pct=0.5
genes.deg.Epi <- scDEG(sc10x,i="Lin",g.1="Epi",g.2="St",t=2)
genes.deg.St <- scDEG(sc10x,i="Lin",g.1="St",g.2="Epi",t=2)
genes.deg.BE <- scDEG(sc10x.Epi.NE,i="Epi.dws.sc",g.1="BE",g.2=c("LE","OE_SCGB","OE_KRT13"),pct=0.25,t=2)
genes.deg.LE <- scDEG(sc10x.Epi.NE,i="Epi.dws.sc",g.1="LE",g.2=c("BE","OE_SCGB","OE_KRT13"),pct=0.25,t=2)
genes.deg.OE1 <- scDEG(sc10x.Epi.NE,i="Epi.dws.sc",g.1="OE_SCGB",g.2=c("BE","LE","OE_KRT13"),pct=0.25,t=2)
genes.deg.OE2 <- scDEG(sc10x.Epi.NE,i="Epi.dws.sc",g.1="OE_KRT13",g.2=c("BE","LE","OE_SCGB"),pct=0.25,t=2)
genes.deg.BE <- scDEG(sc10x.Epi,i="Epi.dws.sc",g.1="BE",g.2=c("LE","OE_SCGB","OE_KRT13"),pct=0.25,t=2)
genes.deg.LE <- scDEG(sc10x.Epi,i="Epi.dws.sc",g.1="LE",g.2=c("BE","OE_SCGB","OE_KRT13"),pct=0.25,t=2)
genes.deg.OE1 <- scDEG(sc10x.Epi,i="Epi.dws.sc",g.1="OE_SCGB",g.2=c("BE","LE","OE_KRT13"),pct=0.25,t=2)
genes.deg.OE2 <- scDEG(sc10x.Epi,i="Epi.dws.sc",g.1="OE_KRT13",g.2=c("BE","LE","OE_SCGB"),pct=0.25,t=2)
genes.deg.NE <- scDEG(sc10x.Epi.NE,i="NE",g.1="NE",g.2=c("BE","LE","OE_KRT13","OE_SCGB","sample"),pct=0.01,t=1)
genes.deg.NE <- scDEG(sc10x.Epi.NE,i="NE",g.1="NE",g.2="ALL",pct=0.01,t=1)
genes.deg.Fib <- scDEG(sc10x.St,i="Merge_Epi.dws.sc_St.dws.sc",g.1="Fib",g.2=c("SM","Endo","Leu"),pct=0.25,t=2)
genes.deg.SM <- scDEG(sc10x.St,i="Merge_Epi.dws.sc_St.dws.sc",g.1="SM",g.2=c("Fib","Endo","Leu"),pct=0.25,t=2)
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment