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Commit f0b20683 authored by Brandi Cantarel's avatar Brandi Cantarel
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Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/rnaseq

parents 50ed24b5 b9d31a3d
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...@@ -13,7 +13,7 @@ before_script: ...@@ -13,7 +13,7 @@ before_script:
stages: stages:
- integration - integration
test_human test_human:
stage: integration stage: integration
script: script:
- nextflow run workflow/main.nf --input test_data/ --design ${CLEAN_REPO_PATH}/test_data/design.rnaseq.txt --output ${CLEAN_REPO_PATH}/human_output - nextflow run workflow/main.nf --input test_data/ --design ${CLEAN_REPO_PATH}/test_data/design.rnaseq.txt --output ${CLEAN_REPO_PATH}/human_output
...@@ -22,7 +22,7 @@ test_human ...@@ -22,7 +22,7 @@ test_human
- ${CLEAN_REPO_PATH} - ${CLEAN_REPO_PATH}
expire_in: 2 days expire_in: 2 days
test_mouse test_mouse:
stage: integration stage: integration
script: script:
- nextflow run workflow/main.nf --input test_data/ --design ${CLEAN_REPO_PATH}/test_data/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/GRCm38 --markdups null --output ${CLEAN_REPO_PATH}/mouse_output - nextflow run workflow/main.nf --input test_data/ --design ${CLEAN_REPO_PATH}/test_data/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/GRCm38 --markdups null --output ${CLEAN_REPO_PATH}/mouse_output
......
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