diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 999fa9030394ab2483fffb8c82711d4506f23b4d..5f50a87b2c22a22b9834fb55a28bbd054e4ddbc0 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -13,7 +13,7 @@ before_script: stages: - integration -test_human +test_human: stage: integration script: - nextflow run workflow/main.nf --input test_data/ --design ${CLEAN_REPO_PATH}/test_data/design.rnaseq.txt --output ${CLEAN_REPO_PATH}/human_output @@ -22,7 +22,7 @@ test_human - ${CLEAN_REPO_PATH} expire_in: 2 days -test_mouse +test_mouse: stage: integration script: - nextflow run workflow/main.nf --input test_data/ --design ${CLEAN_REPO_PATH}/test_data/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/GRCm38 --markdups null --output ${CLEAN_REPO_PATH}/mouse_output