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BICF
Astrocyte
rnaseq
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b9d31a3d
There was a problem fetching the pipeline stages.
Commit
b9d31a3d
authored
7 years ago
by
Brandi Cantarel
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Update .gitlab-ci.yml
parent
8aac26de
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Pipeline
#1650
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in 32 seconds
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b9d31a3d
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@@ -13,7 +13,7 @@ before_script:
stages
:
-
integration
test_human
test_human
:
stage
:
integration
script
:
-
nextflow run workflow/main.nf --input test_data/ --design ${CLEAN_REPO_PATH}/test_data/design.rnaseq.txt --output ${CLEAN_REPO_PATH}/human_output
...
...
@@ -22,7 +22,7 @@ test_human
-
${CLEAN_REPO_PATH}
expire_in
:
2 days
test_mouse
test_mouse
:
stage
:
integration
script
:
-
nextflow run workflow/main.nf --input test_data/ --design ${CLEAN_REPO_PATH}/test_data/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/GRCm38 --markdups
null
--output ${CLEAN_REPO_PATH}/mouse_output
...
...
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