Commits · 72ce1955abb8788fb14abdf1b1d3232be884190e · BICF / Astrocyte / chipseq_analysis

Mar 13, 2019
- Add in nextflow version. · 72ce1955
  Venkat Malladi authored 6 years ago
  
  72ce1955
Mar 12, 2019
- Fix tests. · 82a4e5a5
  Venkat Malladi authored 6 years ago
  
  82a4e5a5
- Fix output. · 89d9e085
  Venkat Malladi authored 6 years ago
  
  89d9e085
- Update process name. · cdb7d690
  Venkat Malladi authored 6 years ago
  
  cdb7d690
- Remove references. · 1326f6de
  Venkat Malladi authored 6 years ago
  
  1326f6de
- Fix main. · a7b0a5a8
  Venkat Malladi authored 6 years ago
  
  a7b0a5a8
- Changed name to replicatedPeaks. · f0fbed43
  Venkat Malladi authored 6 years ago
  
  f0fbed43
- Fix sytnax of processes. · c8ff87a7
  Venkat Malladi authored 6 years ago
  
  c8ff87a7
- Fix config. · af60bbd5
  Venkat Malladi authored 6 years ago
  
  af60bbd5
- Fix syntax. · 6ae5df58
  Venkat Malladi authored 6 years ago
  
  6ae5df58
- Add in software report generation. · 8e0a5bd9
  Venkat Malladi authored 6 years ago
  
  8e0a5bd9
- Generate software report. · 9d650a71
  Venkat Malladi authored 6 years ago
  
  9d650a71
- Change overlap peaks back to original. · 8b35fcee
  Venkat Malladi authored 6 years ago
  
  8b35fcee
Mar 11, 2019
- Fix test output. · 65749462
  Venkat Malladi authored 6 years ago
  
  65749462
- Update software report and generate references. · 30853393
  Venkat Malladi authored 6 years ago
  
  30853393
- Flake8 code. · 6b717038
  Venkat Malladi authored 6 years ago
  
  6b717038
- Update to python standards. · ac22d9cf
  Venkat Malladi authored 6 years ago
  
  ac22d9cf
- Fix spacing. · 50a9336e
  Venkat Malladi authored 6 years ago
  
  50a9336e
Mar 09, 2019
- Add in software versions. · d0a6516b
  Venkat Malladi authored 6 years ago
  
  d0a6516b
- Update tests and add a skip test that only runs on branches. · ee0828f0
  Venkat Malladi authored 6 years ago
  
  ee0828f0
- Add in skipping of diffBind and motif search. · aa5566a2
  Venkat Malladi authored 6 years ago
  
  aa5566a2
- Fix diff peaks output for single end. · 5f6dd111
  Venkat Malladi authored 6 years ago
  
  5f6dd111
Mar 08, 2019
- Remove subprocess. · 963a6f77
  Venkat Malladi authored 6 years ago
  
  963a6f77
- Add in software version parsing. · ff9999f2
  Venkat Malladi authored 6 years ago
  
  ff9999f2
- Fix test output. · 6f79eba4
  Venkat Malladi authored 6 years ago
  
  6f79eba4
Mar 07, 2019
- Remove extra bwa command. · b095c05f
  Venkat Malladi authored 6 years ago
  
  b095c05f
- Fix rename. · 276dac3b
  Venkat Malladi authored 6 years ago
  
  276dac3b
Feb 05, 2019
- Add in correct shuffle step. · 29868d56
  Venkat Malladi authored 6 years ago
  
  29868d56
- Fix output directory. #28. · 81054b5c
  Venkat Malladi authored 6 years ago
  
  81054b5c
Jan 25, 2019
- edited png to pdf · 419a82ca
  Holly Ruess authored 6 years ago
  
  419a82ca
Jan 22, 2019
- change png to pdf · 4a069abf
  Holly Ruess authored 6 years ago
  
  4a069abf
Jan 19, 2019
- Fix the missing parathesis. · e6955b5c
  Venkat Malladi authored 6 years ago
  
  e6955b5c
- Fix test output. · 511f55b0
  Venkat Malladi authored 6 years ago
  
  511f55b0
Jan 18, 2019
- add Pearson Correlation, make plots pdf · e78c5af1
  Holly Ruess authored 6 years ago
  
  e78c5af1
Jan 15, 2019
- Split tests to make more readable. · 0bd2c988
  Venkat Malladi authored 6 years ago
  
  0bd2c988
- Modify tests. · 89340f9c
  Venkat Malladi authored 6 years ago
  
  89340f9c
Jan 14, 2019
- Fix output directories and file names. · 21aac926
  Venkat Malladi authored 6 years ago
  
  21aac926
- Fix Trim reads output to match. · 483dd61f
  Venkat Malladi authored 6 years ago
  
  483dd61f
- Update tests and output file names. · 2b651306
  Venkat Malladi authored 6 years ago
  
  2b651306
Jan 13, 2019
- Update file name output. · 4aa91a5c
  Venkat Malladi authored 6 years ago
  
  4aa91a5c