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Commit edf862a7 authored by Venkat Malladi's avatar Venkat Malladi
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Update to test with new astrocyte runner.

parent ab74722e
1 merge request!66Update to test with new astrocyte runner.
Pipeline #6292 passed with stages
in 19 hours, 27 minutes, and 19 seconds
...@@ -20,12 +20,10 @@ user_configuration: ...@@ -20,12 +20,10 @@ user_configuration:
astrocyte: astrocyte:
stage: astrocyte stage: astrocyte
script: script:
- module load astrocyte/0.1.0 - module load astrocyte/0.2.0
- module unload nextflow - module unload nextflow
- cd .. - cd ..
- astrocyte_cli validate chipseq_analysis - astrocyte_cli validate chipseq_analysis
artifacts:
expire_in: 2 days
single_end_mouse: single_end_mouse:
stage: single stage: single
......
...@@ -17,7 +17,7 @@ All notable changes to this project will be documented in this file. ...@@ -17,7 +17,7 @@ All notable changes to this project will be documented in this file.
- Fix python version for MultiQC report - Fix python version for MultiQC report
- Fix xcor to get lowest non zero value above 50 - Fix xcor to get lowest non zero value above 50
- Fix references to display in Multiqc report - Fix references to display in Multiqc report
- Update astrocyte testing to 0.2.0
## [publish_1.0.6 ] - 2019-05-31 ## [publish_1.0.6 ] - 2019-05-31
### Added ### Added
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...@@ -8,7 +8,7 @@ ...@@ -8,7 +8,7 @@
[![Coverage Report](https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/badges/master/coverage.svg)](https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/commits/master) [![Coverage Report](https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/badges/master/coverage.svg)](https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis/commits/master)
[![Nextflow](https://img.shields.io/badge/nextflow-%E2%89%A50.24.0-brightgreen.svg [![Nextflow](https://img.shields.io/badge/nextflow-%E2%89%A50.24.0-brightgreen.svg
)](https://www.nextflow.io/) )](https://www.nextflow.io/)
[![Astrocyte](https://img.shields.io/badge/astrocyte-%E2%89%A50.1.0-blue.svg)](https://astrocyte-test.biohpc.swmed.edu/static/docs/index.html) [![Astrocyte](https://img.shields.io/badge/astrocyte-%E2%89%A50.2.0-blue)](https://astrocyte-test.biohpc.swmed.edu/static/docs/index.html)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.2648845.svg)](https://doi.org/10.5281/zenodo.2648845) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.2648845.svg)](https://doi.org/10.5281/zenodo.2648845)
......
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