Merge branch '67-python_version' into 'master'

Resolve "Python Version not in Software Version"

Closes #67

See merge request !64

CHANGELOG.md

@@ -14,7 +14,8 @@ All notable changes to this project will be documented in this file.
 - Make gtf and geneName files as param inputs
 - Fix xcor to increase file size for --random-source
 - Fix skip diff test for paired-end data
-- Fix xcor to get lowest non zero value about 50
+- Fix python version for MultiQC report
+- Fix xcor to get lowest non zero value above 50
 - Fix references to display in Multiqc report
 
 

workflow/scripts/generate_versions.py

@@ -46,7 +46,7 @@ SOFTWARE_REGEX = {
     'MEME-ChIP': ['motifSearch_vf/version_memechip.txt', r"Version (\S+)"],
     'DiffBind': ['diffPeaks_vf/version_DiffBind.txt', r"Version (\S+)\""],
     'deepTools': ['experimentQC_vf/version_deeptools.txt', r"deeptools (\S+)"],
-    'Python': ['version_python.txt', r"python, version (\S+)"],
+    'Python': ['version_python.txt', r"Python (\S+)"],
     'MultiQC': ['version_multiqc.txt', r"multiqc, version (\S+)"],
 }
 

workflow/tests/test_generate_software_versions.py

@@ -21,3 +21,4 @@ def test_software_versions_output():
         data_loaded = yaml.load(stream)
 
     assert  len(data_loaded['data'].split('<dt>')) == 18
+    assert  'Not Run' not in data_loaded['data'].split('<dt>')[17]