Commits · f8f9a943ba0d6943c5670d8bda5eaf752b96d39e · BICF / Astrocyte / cellranger_mkfastq

Apr 26, 2019
- Add quotes around paths in case of spaces · b7f26684
  Gervaise Henry authored 5 years ago
  
  b7f26684
- Report fastqc's from multiple flowcells separate · 3f1278c8
  Gervaise Henry authored 5 years ago
  
  3f1278c8
Apr 25, 2019
- Split version file gen to separate process, run single version/multiqc process · d5ba8a06
  Gervaise Henry authored 5 years ago
  
  d5ba8a06
- Run multiple mkfastq if multiple bcls · 42d035c6
  Gervaise Henry authored 5 years ago
  
  42d035c6
- Get untar to run on multiple bcls · de4aab57
  Gervaise Henry authored 5 years ago
  
  de4aab57
Apr 23, 2019
- Get tagging of fastqc working · 2fc45b33
  Gervaise Henry authored 5 years ago
  
  2fc45b33
Apr 22, 2019
- Try to get qcs for multiple flowcells in different folders · 280c7abf
  Gervaise Henry authored 5 years ago
  
  280c7abf
- Fix config folder · 4dd48f74
  Gervaise Henry authored 5 years ago
  
  4dd48f74
- Move multiqc config · 8e7182f6
  Gervaise Henry authored 5 years ago
  
  8e7182f6
Apr 12, 2019
- Fix · 7255080d
  Gervaise Henry authored 6 years ago
  
  7255080d
Apr 11, 2019
- Removed redundant command. · 7a60cbd7
  Jonathan Gesell authored 6 years ago
  
  7a60cbd7
- Updated fastqc for better multithreading, updated module lists. · 2f5a2b47
  Jonathan Gesell authored 6 years ago
  
  2f5a2b47
Apr 10, 2019
- Update docs · 862a479e
  Gervaise Henry authored 6 years ago
  
  862a479e
Apr 09, 2019
- Add run name param · 181c0f05
  Gervaise Henry authored 6 years ago
  
  181c0f05
- Add process tags · 852500e6
  Gervaise Henry authored 6 years ago
  
  852500e6
Apr 08, 2019
- Rejigger process queues · 919ebd3d
  Gervaise Henry authored 6 years ago
  
  919ebd3d
- Remove premature reference script and set fastq process to use super queue · 0ad4bb2a
  Gervaise Henry authored 6 years ago
  
  0ad4bb2a
- Change report order · 00b66d4c
  Gervaise Henry authored 6 years ago
  
  00b66d4c
- Add custom multiqc report yaml with software versions · 42e5fcf0
  Gervaise Henry authored 6 years ago
  
  42e5fcf0
Apr 07, 2019
- Improve input file import of fastqc process · 9fe4abf2
  Gervaise Henry authored 6 years ago
  
  9fe4abf2
- Add fastqc (needs input file optimization) · 7b474afc
  Gervaise Henry authored 6 years ago
  
  7b474afc
Apr 05, 2019
- Add basic multiqc process · 6e722372
  Gervaise Henry authored 6 years ago
  
  6e722372
Apr 04, 2019
- Updated and corrected for Astrocyte · aef86ad7
  Jonathan Gesell authored 6 years ago
  
  aef86ad7
Mar 28, 2019
- Added better multithredding utilization to Cellranger step. · eb4dd6b6
  Jonathan Gesell authored 6 years ago
  
  eb4dd6b6
Mar 24, 2019
- Updates, CI, config, main, check_design · 8f3b2fe6
  Gervaise Henry authored 6 years ago
  
  8f3b2fe6
- Copy setting and documentation from cellranger_count · b64eab3e
  Gervaise Henry authored 6 years ago
  
  b64eab3e
Mar 21, 2019
- Added parallel decompression of BCL file using pigz · 29a14c64
  Jonathan Gesell authored 6 years ago
  
  29a14c64
Jun 18, 2018
- Fix module loading issue. · cca1abd1
  Venkat Malladi authored 6 years ago
  
  cca1abd1
- Remove modules. · 9e15745f
  Venkat Malladi authored 6 years ago
  
  9e15745f
- Fix modules. · 7019bd49
  Venkat Malladi authored 6 years ago
  
  7019bd49
Jun 15, 2018
- Update main.nf (python-python3) · f3417629
  Gervaise Henry authored 6 years ago
  
  f3417629
- Untar & gzip bcl · 83ee9658
  Gervaise Henry authored 6 years ago
  
  83ee9658
- Fix tar.gz · a7ed4ef1
  Venkat Malladi authored 6 years ago
  
  a7ed4ef1
Jun 14, 2018
- Make pipeline to astrocyte standards. · 1487eaa6
  Venkat Malladi authored 6 years ago
  
  1487eaa6
Jun 07, 2018
- Initial commit · 54b35b23
  Gervaise Henry authored 6 years ago
  
  54b35b23