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Commit 7019bd49 authored by Venkat Malladi's avatar Venkat Malladi
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Fix modules.

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......@@ -30,6 +30,7 @@ process checkDesignFile {
script:
"""
module load python/3.6.1-2-anaconda
python3 $baseDir/scripts/check_design.py -d $params.designFile
"""
}
......@@ -74,6 +75,8 @@ process mkfastq {
script:
"""
module load cellranger/2.1.1
module bcl2fastq/2.17.1.14
cellranger mkfastq --id="${bcl.baseName}" --run=$bcl --csv=$designPaths
"""
}
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