Commits · d1f74a991f6b233d8f09761a5d54cbac262f2a9f · BICF / Astrocyte / cellranger_mkfastq

Dec 31, 2019
- Squash many small commits to get working · 428d3688
  Gervaise Henry authored 5 years ago
  
  428d3688
Dec 28, 2019
- Set scripts as inputs · 458eec97
  Gervaise Henry authored 5 years ago
  
  458eec97
Dec 27, 2019
- Remove cellranger ran fastqc output · 4ee9a681
  Gervaise Henry authored 5 years ago
  
  4ee9a681
- Update mkfastq outputs · 2427f43a
  Gervaise Henry authored 5 years ago
  
  2427f43a
- Remove SLURM options from mkfastq process · 6564fa23
  Gervaise Henry authored 5 years ago
  
  6564fa23
- Remove conda env from process · d61b199d
  Gervaise Henry authored 5 years ago
  
  d61b199d
- Remove logging from conda env in checkDesignFile to see if in base image · 1fac8db4
  Gervaise Henry authored 5 years ago
  
  1fac8db4
- Try putting conda env to install packages into checkDesignFile · 0596edd0
  Gervaise Henry authored 5 years ago
  
  0596edd0
- Temp remove version and multiqc processes · 121b371f
  Gervaise Henry authored 5 years ago
  
  121b371f
Dec 26, 2019
- Remove modules and queues from nf · 27517310
  Gervaise Henry authored 5 years ago
  
  27517310
Nov 07, 2019
- Remove publish dirs for intermediate processes · ffe94839
  Gervaise Henry authored 5 years ago
  
  ffe94839
Aug 29, 2019
- Remove spaces from design file · 68be71c4
  Jeremy Mathews authored 5 years ago
  
  68be71c4
Aug 14, 2019
- Update main.nf · 9894e341
  Gervaise Henry authored 5 years ago
  
  9894e341
- Update main.nf · 2cdac8c8
  Gervaise Henry authored 5 years ago
  
  2cdac8c8
Jul 31, 2019
- Update Cellranger to version 3.1.0 · 5b73fc02
  Jeremy Mathews authored 5 years ago
  
  5b73fc02
Jul 10, 2019
- fixed style · a830a0c9
  Holly Ruess authored 5 years ago
  
  a830a0c9
Jul 08, 2019
- Minor formatting · 42ddd6e9
  Gervaise Henry authored 5 years ago
  
  42ddd6e9
- Create Design file for count with 1 bcl input · 6dcc8372
  Jeremy Mathews authored 5 years ago
  
  6dcc8372
Jun 28, 2019
- Add bicf logo and don't add multiqc raw data · 4d1f21d7
  Gervaise Henry authored 5 years ago
  
  4d1f21d7
- Change some formatting to match cellranger_count · 61515526
  Gervaise Henry authored 5 years ago
  
  61515526
Jun 25, 2019
- Add References Reort and Markdown file; Update README file · 9a523177
  Jeremy Mathews authored 5 years ago
  
  9a523177
May 24, 2019
- Move untarBCl to Script · 010ddbe9
  Jeremy Mathews authored 5 years ago
  
  010ddbe9
May 21, 2019
- Check unTar String Directory for spaces · e94c5b4a
  Jeremy Mathews authored 5 years ago
  
  e94c5b4a
May 20, 2019
- Directory Check · 5e3a85b8
  Jeremy Mathews authored 5 years ago
  
  5e3a85b8
- Check Directory Path in mkfastq · f67d9fe6
  Jeremy Mathews authored 5 years ago
  
  f67d9fe6
May 17, 2019
- Test Folder Check with file rename and directory exit · f513e97a
  Jeremy Mathews authored 5 years ago
  
  f513e97a
- Collapse Folder and File Names · ea391ce2
  Jeremy Mathews authored 5 years ago
  
  ea391ce2
Apr 26, 2019
- Add quotes around paths in case of spaces · b7f26684
  Gervaise Henry authored 5 years ago
  
  b7f26684
- Report fastqc's from multiple flowcells separate · 3f1278c8
  Gervaise Henry authored 5 years ago
  
  3f1278c8
Apr 25, 2019
- Split version file gen to separate process, run single version/multiqc process · d5ba8a06
  Gervaise Henry authored 5 years ago
  
  d5ba8a06
- Run multiple mkfastq if multiple bcls · 42d035c6
  Gervaise Henry authored 5 years ago
  
  42d035c6
- Get untar to run on multiple bcls · de4aab57
  Gervaise Henry authored 5 years ago
  
  de4aab57
Apr 23, 2019
- Get tagging of fastqc working · 2fc45b33
  Gervaise Henry authored 5 years ago
  
  2fc45b33
Apr 22, 2019
- Try to get qcs for multiple flowcells in different folders · 280c7abf
  Gervaise Henry authored 5 years ago
  
  280c7abf
- Fix config folder · 4dd48f74
  Gervaise Henry authored 5 years ago
  
  4dd48f74
- Move multiqc config · 8e7182f6
  Gervaise Henry authored 5 years ago
  
  8e7182f6
Apr 12, 2019
- Fix · 7255080d
  Gervaise Henry authored 6 years ago
  
  7255080d
Apr 11, 2019
- Removed redundant command. · 7a60cbd7
  Jonathan Gesell authored 6 years ago
  
  7a60cbd7
- Updated fastqc for better multithreading, updated module lists. · 2f5a2b47
  Jonathan Gesell authored 6 years ago
  
  2f5a2b47
Apr 10, 2019
- Update docs · 862a479e
  Gervaise Henry authored 6 years ago
  
  862a479e