Remove SLURM options from mkfastq process

6564fa23 · Gervaise Henry · d61b199d · 6564fa23
Commit 6564fa23 authored 5 years ago by Gervaise Henry
--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -97,7 +97,7 @@ process mkfastq {
    """
    hostname
    ulimit -a  
-    cellranger mkfastq --id=${bcl.baseName} --run=${bcl} --csv=${design} -r \$SLURM_CPUS_ON_NODE  -p \$SLURM_CPUS_ON_NODE  -w \$SLURM_CPUS_ON_NODE 
+    cellranger mkfastq --id=${bcl.baseName} --run=${bcl} --csv=${design}
    """

 }