Commits · c159bf796ebc6775fc4a5a98a1490bb514066ace · BICF / Astrocyte / cellranger_mkfastq

Jul 31, 2019
- Update Cellranger to version 3.1.0 · 5b73fc02
  Jeremy Mathews authored 5 years ago
  
  5b73fc02
Jul 10, 2019
- fixed style · a830a0c9
  Holly Ruess authored 5 years ago
  
  a830a0c9
Jul 08, 2019
- Minor formatting · 42ddd6e9
  Gervaise Henry authored 5 years ago
  
  42ddd6e9
- Create Design file for count with 1 bcl input · 6dcc8372
  Jeremy Mathews authored 5 years ago
  
  6dcc8372
Jun 28, 2019
- Add bicf logo and don't add multiqc raw data · 4d1f21d7
  Gervaise Henry authored 5 years ago
  
  4d1f21d7
- Change some formatting to match cellranger_count · 61515526
  Gervaise Henry authored 5 years ago
  
  61515526
Jun 25, 2019
- Add References Reort and Markdown file; Update README file · 9a523177
  Jeremy Mathews authored 5 years ago
  
  9a523177
May 24, 2019
- Move untarBCl to Script · 010ddbe9
  Jeremy Mathews authored 5 years ago
  
  010ddbe9
May 21, 2019
- Check unTar String Directory for spaces · e94c5b4a
  Jeremy Mathews authored 5 years ago
  
  e94c5b4a
May 20, 2019
- Directory Check · 5e3a85b8
  Jeremy Mathews authored 5 years ago
  
  5e3a85b8
- Check Directory Path in mkfastq · f67d9fe6
  Jeremy Mathews authored 5 years ago
  
  f67d9fe6
May 17, 2019
- Test Folder Check with file rename and directory exit · f513e97a
  Jeremy Mathews authored 5 years ago
  
  f513e97a
- Collapse Folder and File Names · ea391ce2
  Jeremy Mathews authored 5 years ago
  
  ea391ce2
Apr 26, 2019
- Add quotes around paths in case of spaces · b7f26684
  Gervaise Henry authored 5 years ago
  
  b7f26684
- Report fastqc's from multiple flowcells separate · 3f1278c8
  Gervaise Henry authored 5 years ago
  
  3f1278c8
Apr 25, 2019
- Split version file gen to separate process, run single version/multiqc process · d5ba8a06
  Gervaise Henry authored 5 years ago
  
  d5ba8a06
- Run multiple mkfastq if multiple bcls · 42d035c6
  Gervaise Henry authored 5 years ago
  
  42d035c6
- Get untar to run on multiple bcls · de4aab57
  Gervaise Henry authored 5 years ago
  
  de4aab57
Apr 23, 2019
- Get tagging of fastqc working · 2fc45b33
  Gervaise Henry authored 5 years ago
  
  2fc45b33
Apr 22, 2019
- Try to get qcs for multiple flowcells in different folders · 280c7abf
  Gervaise Henry authored 5 years ago
  
  280c7abf
- Fix config folder · 4dd48f74
  Gervaise Henry authored 5 years ago
  
  4dd48f74
- Move multiqc config · 8e7182f6
  Gervaise Henry authored 5 years ago
  
  8e7182f6
Apr 12, 2019
- Fix · 7255080d
  Gervaise Henry authored 6 years ago
  
  7255080d
Apr 11, 2019
- Removed redundant command. · 7a60cbd7
  Jonathan Gesell authored 6 years ago
  
  7a60cbd7
- Updated fastqc for better multithreading, updated module lists. · 2f5a2b47
  Jonathan Gesell authored 6 years ago
  
  2f5a2b47
Apr 10, 2019
- Update docs · 862a479e
  Gervaise Henry authored 6 years ago
  
  862a479e
Apr 09, 2019
- Add run name param · 181c0f05
  Gervaise Henry authored 6 years ago
  
  181c0f05
- Add process tags · 852500e6
  Gervaise Henry authored 6 years ago
  
  852500e6
Apr 08, 2019
- Rejigger process queues · 919ebd3d
  Gervaise Henry authored 6 years ago
  
  919ebd3d
- Remove premature reference script and set fastq process to use super queue · 0ad4bb2a
  Gervaise Henry authored 6 years ago
  
  0ad4bb2a
- Change report order · 00b66d4c
  Gervaise Henry authored 6 years ago
  
  00b66d4c
- Add custom multiqc report yaml with software versions · 42e5fcf0
  Gervaise Henry authored 6 years ago
  
  42e5fcf0
Apr 07, 2019
- Improve input file import of fastqc process · 9fe4abf2
  Gervaise Henry authored 6 years ago
  
  9fe4abf2
- Add fastqc (needs input file optimization) · 7b474afc
  Gervaise Henry authored 6 years ago
  
  7b474afc
Apr 05, 2019
- Add basic multiqc process · 6e722372
  Gervaise Henry authored 6 years ago
  
  6e722372
Apr 04, 2019
- Updated and corrected for Astrocyte · aef86ad7
  Jonathan Gesell authored 6 years ago
  
  aef86ad7
Mar 28, 2019
- Added better multithredding utilization to Cellranger step. · eb4dd6b6
  Jonathan Gesell authored 6 years ago
  
  eb4dd6b6
Mar 24, 2019
- Updates, CI, config, main, check_design · 8f3b2fe6
  Gervaise Henry authored 6 years ago
  
  8f3b2fe6
- Copy setting and documentation from cellranger_count · b64eab3e
  Gervaise Henry authored 6 years ago
  
  b64eab3e
Mar 21, 2019
- Added parallel decompression of BCL file using pigz · 29a14c64
  Jonathan Gesell authored 6 years ago
  
  29a14c64