Commits · f80afb2892ea9736ed86cbba654ceb639cc0cb41 · BICF / Astrocyte / cellranger_count

Feb 21, 2020
- Merge branch '40-BUG.thread.error' into 'develop' · f80afb28
  Gervaise Henry authored 5 years ago
```
Resolve "BUG: thread error on Astrocyte"

Closes #39 and #40

See merge request !59
```
  f80afb28
- Fix nextflow config layering problem · 09cb56b3
  Gervaise Henry authored 5 years ago
  
  09cb56b3
- Update aws configs · 7c0192ff
  Gervaise Henry authored 5 years ago
  
  7c0192ff
- Edit changelog · 0acf7af9
  Gervaise Henry authored 5 years ago
  
  0acf7af9
- Remove redundant nextflow.config · e762ce19
  Gervaise Henry authored 5 years ago
  
  e762ce19
- Use profiles in ci · b45c214e
  Gervaise Henry authored 5 years ago
  
  b45c214e
- Add profiles to nextflow.config · 1baad703
  Gervaise Henry authored 5 years ago
  
  1baad703
- Add config update (layered) · 6669d2a9
  Gervaise Henry authored 5 years ago
  
  6669d2a9
- Add ulimit -u to prevent thread error · f57ad93b
  Gervaise Henry authored 5 years ago
  
  f57ad93b
Nov 08, 2019
- Add cluster hold option in biohpc config · 2eab2636
  Gervaise Henry authored 5 years ago
  
  2eab2636
- Remove unnecessary intermediate outputs from publish and remove unit tests for them · 0eacd554
  Gervaise Henry authored 5 years ago
  
  0eacd554
Nov 07, 2019
- Merge branch '37-CheckDesignFile' into 'develop' · 2c696901
  Gervaise Henry authored 5 years ago
```
Resolve 37-Design File Check

Closes #37

See merge request !58
```
  2c696901
- Resolve 37-Design File Check · 7972b21c
  Jeremy Mathews authored 5 years ago
  
  7972b21c
Oct 08, 2019
- Add GHH Nextflow Tower token to config · e552fe2e
  Gervaise Henry authored 5 years ago
  
  e552fe2e
- Add Nextflow Tower to CI · d4074018
  Gervaise Henry authored 5 years ago
  
  d4074018
Sep 16, 2019
- Update index.md · 15542ebf
  Gervaise Henry authored 5 years ago
  
  15542ebf
- Update index.md · ed0be031
  Gervaise Henry authored 5 years ago
  
  ed0be031
Aug 14, 2019

Update CHANGELOG.md · bedc0841
Gervaise Henry authored 5 years ago

bedc0841

Update workflow/main.nf, workflow/scripts/check_design.py,... · 7ec07b61

Gervaise Henry authored 5 years ago

Update workflow/main.nf, workflow/scripts/check_design.py, workflow/scripts/generate_references.py, workflow/scripts/generate_versions.py, workflow/scripts/filename_check.sh, workflow/tests/test_check_design.py, workflow/tests/test_count.py, workflow/tests/test_multiqc.py, workflow/tests/test_versions.py files

7ec07b61

Add LICENSE · 8acb2e82
Gervaise Henry authored 5 years ago

8acb2e82

Aug 13, 2019
- Merge branch '35-ShinyApp' into 'develop' · 49a71f1e
  Gervaise Henry authored 5 years ago
```
Resolve "MultiQC error"

Closes #36

See merge request !56
```
  49a71f1e
- 36-MultiQC Error · 6b8418d3
  Jeremy Mathews authored 5 years ago
  
  6b8418d3
Aug 08, 2019
- Initial Commit for working vizapp · e4f70e92
  Jeremy Mathews authored 5 years ago
  
  e4f70e92
Aug 05, 2019
- Merge branch 'RemoveExceptFromCI' into 'develop' · 7a8d4bc2
  Gervaise Henry authored 5 years ago
```
Remove md changes from CI

See merge request !55
```
  7a8d4bc2
- Remove md changes from CI · b762db38
  Jeremy Mathews authored 5 years ago
  
  b762db38
Jul 31, 2019
- Update .gitlab-ci.yml · e3687c64
  Gervaise Henry authored 5 years ago
  
  e3687c64
- Merge branch '30-v3.1.0' into 'develop' · f30b5e5b
  Gervaise Henry authored 5 years ago
```
Resolve "Add cellranger v 3.1.0"

Closes #30, #31, #32, and #33

See merge request !54
```
  f30b5e5b
- no CI on md files · 146aa596
  Jeremy Mathews authored 5 years ago
  
  146aa596
- Add artifacts to CI · b832df3d
  Jeremy Mathews authored 5 years ago
  
  b832df3d
- Mix Channels of 310 · 4f7648be
  Jeremy Mathews authored 5 years ago
  
  4f7648be
- fix .gitlab-ci.yml · 32f55ff9
  Jeremy Mathews authored 5 years ago
  
  32f55ff9
- Add Cellranger v3.1.0 · d1f94a03
  Jeremy Mathews authored 5 years ago
  
  d1f94a03
Jul 24, 2019
- Update CHANGELOG.md · c5d45c28
  Gervaise Henry authored 5 years ago
  
  c5d45c28
- Update references.md · 32179c72
  Gervaise Henry authored 5 years ago
  
  32179c72
- Update CHANGELOG.md · 1019aefc
  Gervaise Henry authored 5 years ago
  
  1019aefc
Jul 23, 2019
- Merge branch '29-VersionCompatibility' into 'develop' · 692b7962
  Gervaise Henry authored 5 years ago
```
Resolve "Test for kitVersion=3 and version=2.1.1 and exit if true"

Closes #29

See merge request !52
```
  692b7962
- Final Version · 9ff49cb2
  Jeremy Mathews authored 5 years ago
  
  9ff49cb2
- New branch 29 · 45cbf237
  Jeremy Mathews authored 5 years ago
  
  45cbf237
- Merge branch '28-AddPytestCI' into 'develop' · 14599fcc
  Gervaise Henry authored 5 years ago
```
Resolve "Add pytest to CI"

Closes #28

See merge request !51
```
  14599fcc
- Merge branch '28-AddPytestCI' of... · 9eefea9d
  Jeremy Mathews authored 5 years ago
```
Merge branch '28-AddPytestCI' of git.biohpc.swmed.edu:BICF/Astrocyte/cellranger_count into 28-AddPytestCI
```
  9eefea9d