no CI on md files

.gitlab-ci.yml

@@ -21,6 +21,9 @@ stages:
 
 astrocyte_check:
   stage: astrocyte
+  except:
+    changes:
+      - "**/*.md"
   script:
     - astrocyte_cli check ../cellranger_count
   artifacts:
@@ -36,8 +39,11 @@ simple_1:
     - branches
     - tags
   except:
-    - develop
-    - master
+    refs:
+      - develop
+      - master
+    changes:
+      - "**/*.md"
   script:
   - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'three' --version '3.1.0'
   - pytest -m count310
@@ -59,9 +65,12 @@ simple_2:
   only:
     - branches
   except:
-    - develop
-    - master
-    - tags
+    refs:
+      - develop
+      - master
+      - tags
+    changes:
+      - "**/*.md"
   script:
   - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.1.0'
   - pytest -m count310
@@ -84,7 +93,10 @@ detailed_1:
     - develop
     - master
   except:
-    - tags
+    refs:
+      - tags
+    changes:
+      - "**/*.md"
   script:
   - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.1.0'
   - pytest -m count310
@@ -108,7 +120,10 @@ detailed_2:
     - develop
     - master
   except:
-    - tags
+    refs:
+      - tags
+    changes:
+      - "**/*.md"
   script:
   - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.0.2'
   - pytest -m count302
@@ -131,7 +146,10 @@ detailed_3:
     - develop
     - master
   except:
-    - tags
+    refs:
+      - tags
+    changes:
+      - "**/*.md"
   script:
   - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v3s2r10k/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.0.1'
   - pytest -m count301
@@ -154,7 +172,10 @@ detailed_4:
     - develop
     - master
   except:
-    - tags
+    refs:
+      - tags
+    changes:
+      - "**/*.md"
   script:
   - nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v2s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v2s2r10k/design.csv" --genome 'GRCh38-1.2.0' --kitVersion 'two' --version '2.1.1'
   - pytest -m count211