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Commit 146aa596 authored by Jeremy Mathews's avatar Jeremy Mathews
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no CI on md files

parent b832df3d
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2 merge requests!57Develop,!54Resolve "Add cellranger v 3.1.0"
Pipeline #4594 passed with stages
in 20 minutes and 8 seconds
......@@ -21,6 +21,9 @@ stages:
astrocyte_check:
stage: astrocyte
except:
changes:
- "**/*.md"
script:
- astrocyte_cli check ../cellranger_count
artifacts:
......@@ -36,8 +39,11 @@ simple_1:
- branches
- tags
except:
- develop
- master
refs:
- develop
- master
changes:
- "**/*.md"
script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s1r500/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'three' --version '3.1.0'
- pytest -m count310
......@@ -59,9 +65,12 @@ simple_2:
only:
- branches
except:
- develop
- master
- tags
refs:
- develop
- master
- tags
changes:
- "**/*.md"
script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v3s1r500/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v3s1r500/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.1.0'
- pytest -m count310
......@@ -84,7 +93,10 @@ detailed_1:
- develop
- master
except:
- tags
refs:
- tags
changes:
- "**/*.md"
script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.1.0'
- pytest -m count310
......@@ -108,7 +120,10 @@ detailed_2:
- develop
- master
except:
- tags
refs:
- tags
changes:
- "**/*.md"
script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v3s2r10k/design.csv" --genome 'GRCh38-3.0.0' --kitVersion 'auto' --version '3.0.2'
- pytest -m count302
......@@ -131,7 +146,10 @@ detailed_3:
- develop
- master
except:
- tags
refs:
- tags
changes:
- "**/*.md"
script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/mu.v3s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/mu.v3s2r10k/design.csv" --genome 'mm10-3.0.0' --kitVersion 'three' --version '3.0.1'
- pytest -m count301
......@@ -154,7 +172,10 @@ detailed_4:
- develop
- master
except:
- tags
refs:
- tags
changes:
- "**/*.md"
script:
- nextflow run workflow/main.nf --fastq "$CI_PROJECT_DIR/test_data/hu.v2s2r10k/*.fastq.gz" --designFile "$CI_PROJECT_DIR/test_data/hu.v2s2r10k/design.csv" --genome 'GRCh38-1.2.0' --kitVersion 'two' --version '2.1.1'
- pytest -m count211
......
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