Add profiles to nextflow.config

nextflow.config

 profiles {
-  standard {
-    includeConfig 'workflow/conf/biohpc.config'
+  biohpc {
+    includeConfig 'conf/biohpc.config'
   }
+  local {
+    includeConfig 'conf/biohpc_local.config'
+  }
+  cluster {
+    includeConfig 'conf/biohpc_cluster.config'
+  }
+  aws {
+    includeConfig 'conf/aws.config'
+  }
+  ondemand {
+    includeConfig 'conf/aws_ondemand.config'
+  }
+  spot {
+    includeConfig 'conf/aws_spot.config'
+  }
+  awsUserDefined {
+    includeConfig 'conf/aws_user.config'
+  }
+}
+
+trace {
+  enabled = true
+  file = 'pipeline_trace.txt'
+  fields = 'task_id,native_id,process,name,status,exit,submit,start,complete,duration,realtime,%cpu,%mem,rss'
+}
+
+timeline {
+  enabled = true
+  file = 'timeline.html'
+}
+	
+report {
+  enabled = true
+  file = 'report.html'
+}
+
+tower {
+  accessToken = '3ade8f325d4855434b49aa387421a44c63e3360f'
+  enabled = true
 }
+
+manifest {
+  homePage = 'https://git.biohpc.swmed.edu/BICF/Astrocyte/cellranger_count'
+  description = 'This pipeline is a wrapper for the cellranger count tool from 10x Genomics. It takes fastq files from 10x Genomics Single Cell Gene Expression libraries, performs alignment, filtering, barcode counting, and UMI counting. It uses the Chromium cellular barcodes to generate gene-barcode matrices, determine clusters, and perform gene expression analysis.'
+  mainScript = 'main.nf'
+  version = 'v1.2.1_indev'
+  nextflowVersion = '>=0.31.0'
+}
\ No newline at end of file