Commits · 079739dfd5cfb8dd14e7f96dc984ab0288dacd46 · BICF / Astrocyte / cellranger_count

Jun 21, 2020
- Fix multi sample, local ulimit set, v2.1.1 · 079739df
  Gervaise Henry authored 4 years ago
  
  079739df
- Fix multiqc config · 67eb6554
  Gervaise Henry authored 4 years ago
  
  67eb6554
- Fix module load and ulimits · 3d5b1095
  Gervaise Henry authored 4 years ago
  
  3d5b1095
- Version 2.1.0 · 9a2e93c1
  Gervaise Henry authored 4 years ago
  
  9a2e93c1
- Fix cluster process passing · 80771512
  Gervaise Henry authored 4 years ago
  
  80771512
- Fix version and references script passing · 7bc7c3fd
  Gervaise Henry authored 4 years ago
  
  7bc7c3fd
- Copy filename_checkScript int each input for cellranger processes · 2622d647
  Gervaise Henry authored 4 years ago
  
  2622d647
- Make script files inputs · 986b1246
  Gervaise Henry authored 4 years ago
  
  986b1246
- Merge branch 'de-containerize' into 'develop' · bca7b52f
  Gervaise Henry authored 4 years ago
```
Update configs folder name

See merge request !72
```
  bca7b52f
- Update configs folder name · a455db0d
  Gervaise Henry authored 4 years ago
  
  a455db0d
- Merge branch 'de-containerize' into 'develop' · 092561b6
  Gervaise Henry authored 4 years ago
```
De containerize

See merge request !71
```
  092561b6
- Remove quiet option from nextflow run ci · 3530bc3b
  Gervaise Henry authored 4 years ago
  
  3530bc3b
- De-containerize (remove cellranger 2.1.1 because no BioHPC module) · 554ef719
  Gervaise Henry authored 4 years ago
  
  554ef719
- Major cleanup update · 5677b2e2
  Gervaise Henry authored 4 years ago
  
  5677b2e2
May 25, 2020
- Add singularity to astrocyte · 4da781e7
  Gervaise Henry authored 4 years ago
  
  4da781e7
Apr 26, 2020
- Merge branch '45-bug.multiqc' into 'develop' · b5306c4a
  Gervaise Henry authored 5 years ago
```
Remove multiqc module

Closes #45

See merge request !69
```
  b5306c4a
- Update CHANGELOG.md · bae2fcb5
  Gervaise Henry authored 5 years ago
  
  bae2fcb5
- Remove multiqc module · 6fca166f
  Gervaise Henry authored 5 years ago
  
  6fca166f
Apr 25, 2020
- Merge branch 'track.pipeline' into 'develop' · f32d0160
  Gervaise Henry authored 5 years ago
```
Track.pipeline

See merge request !68
```
  f32d0160
- Fix erroneous ci flags · 2838803e
  Gervaise Henry authored 5 years ago
  
  2838803e
- Convert tracking to curl · 49d27e42
  Gervaise Henry authored 5 years ago
  
  49d27e42
- Move handlers to bottom of .nf · c44a8e26
  Gervaise Henry authored 5 years ago
  
  c44a8e26
- Test println in onComplete · 9962226e
  Gervaise Henry authored 5 years ago
  
  9962226e
- Fix astrocyte bool · 13a0f3d8
  Gervaise Henry authored 5 years ago
  
  13a0f3d8
- Rearrange scripts · 30e24505
  Gervaise Henry authored 5 years ago
  
  30e24505
- Move onError and onComplete scripts outside of handlers · 400f7a82
  Gervaise Henry authored 5 years ago
  
  400f7a82
- Add status and onError, on Complete updates · 73181ef6
  Gervaise Henry authored 5 years ago
  
  73181ef6
- Add trackStart process · 406b47be
  Gervaise Henry authored 5 years ago
  
  406b47be
Apr 20, 2020
- Merge branch '44-fix.tread.error' into 'develop' · f5d459f2
  Gervaise Henry authored 5 years ago
```
Add ulimit -u to all cellranger processes

Closes #44

See merge request !66
```
  f5d459f2
- Add ulimit -u to all cellranger processes · 4c9062b8
  Gervaise Henry authored 5 years ago
  
  4c9062b8
Apr 16, 2020
- Merge branch 'master' into 'develop' · 17ef81b9
  Gervaise Henry authored 5 years ago
```
Drop indev in version, finish adding aws details

See merge request !65
```
  17ef81b9
- Drop indev in version, finish adding aws details · a1d75b8a
  Gervaise Henry authored 5 years ago
  
  a1d75b8a
- Merge branch 'master' into 'develop' · 36e60a3d
  Gervaise Henry authored 5 years ago
```
Master

See merge request !64
```
  36e60a3d
Apr 15, 2020
- Update index.md · c54dd859
  Gervaise Henry authored 5 years ago
  
  c54dd859
- Update astrocyte_pkg.yml with cellranger 2.2.0 · a46a35ea
  Gervaise Henry authored 5 years ago
  
  a46a35ea
- Merge branch 'develop' into 'master' · 0f50ff0a
  Gervaise Henry authored 5 years ago
```
Develop

See merge request !63
```
  0f50ff0a
- Merge branch '41-containerize' into 'develop' · e634ce8e
  Gervaise Henry authored 5 years ago
```
Resolve "Containerize"

Closes #41

See merge request !62
```
  e634ce8e
- Fix mm10 ci trigger criteria · d52e0fbb
  Gervaise Henry authored 5 years ago
  
  d52e0fbb
- Change ci job run criteria · ab560486
  Gervaise Henry authored 5 years ago
  
  ab560486
- Add GitLab templates · 208b8334
  Gervaise Henry authored 5 years ago
  
  208b8334